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NC_018272.1__YP_006560439.1__B618_gp40__00040
Bact-VirNC_018272.1__YP_006560439.1__B618_gp40__00040
Identity
- Accession:
- NC_018272 ↗
- Kingdom:
- phage
Quality
91.1
mean pLDDT
Taxonomy
TaxID: 1168479
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-60
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mabA00 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.62 | 53.0 | 4.45e-01 | 98.1% | 56.5% |
| 3ephA02 | 1.10.20.140 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.62 | 39.0 | 3.59e-01 | 71.2% | 47.2% |
| 3ugjA02 | 1.10.8.750 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Phosphoribosylformylglycinamidine synthase, linker domain | 0.61 | 45.0 | 4.26e-01 | 88.5% | 66.1% |
| 3gmfA02 | 1.10.40.110 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › | 0.60 | 41.0 | 3.37e-01 | 73.1% | 94.2% |
| 2m35A00 | 1.10.60.50 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › | 0.59 | 40.0 | 4.03e-01 | 71.2% | 71.2% |
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.59 | 47.0 | 4.27e-01 | 100.0% | 64.2% |
| 3d6jA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 48.0 | 4.55e-01 | 100.0% | 83.6% |
| 4ex6A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 48.0 | 4.50e-01 | 100.0% | 82.1% |
| 3v7nA01 | 3.90.1380.10 | Alpha Beta › Alpha-Beta Complex › threonine synthase, domain 1, chain A › Threonine synthase, N-terminal domain | 0.56 | 39.0 | 3.31e-01 | 75.0% | 47.4% |
| 1wjtA00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.53 | 42.0 | 3.41e-01 | 90.4% | 72.8% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 38.0 | 3.31e-01 | 96.2% | 48.5% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3400498 | 105.1.1.1 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH | 0.78 | 53.0 | 4.02e-01 | 71.2% | 30.8% |
| 4207583 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.63 | 53.0 | 3.40e-01 | 100.0% | 20.7% |
| 4973838 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.62 | 44.0 | 3.58e-01 | 76.9% | 56.3% |
| 3925190 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.59 | 51.0 | 3.36e-01 | 100.0% | 26.1% |
| 1760264 | 244.4.1.3 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases, PF27537 | 0.58 | 42.0 | 3.47e-01 | 86.5% | 44.8% |
| 3642260 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.58 | 51.0 | 3.32e-01 | 100.0% | 24.4% |
| 3804005 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.58 | 50.0 | 3.27e-01 | 100.0% | 25.5% |
| 4218296 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.58 | 39.0 | 3.68e-01 | 71.2% | 92.3% |
| 154923 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.57 | 48.0 | 3.23e-01 | 100.0% | 25.1% |
| 3455206 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.57 | 46.0 | 3.11e-01 | 100.0% | 25.0% |
| 3697050 | 103.13.1.0 ↗ | alpha arrays › RuvA-C › C-terminal lid domain of glucokinase regulatory protein › C-terminal lid domain of glucokinase regulatory protein | 0.57 | 43.0 | 3.89e-01 | 84.6% | 70.7% |
| 4011395 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.56 | 48.0 | 3.98e-01 | 100.0% | 61.0% |
| 3604252 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.51 | 39.0 | 3.88e-01 | 94.2% | 83.6% |
| 4964234 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.51 | 43.0 | 3.88e-01 | 92.3% | 82.9% |
D2
high
residues 68-162
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cqxC00 | 1.20.58.890 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 25.0 | 2.78e-01 | 96.8% | 40.7% |
| 3tcrA00 | 3.40.980.10 | Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain | 0.58 | 37.0 | 3.09e-01 | 100.0% | 38.0% |
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.54 | 38.0 | 4.03e-01 | 86.3% | 84.0% |
| 2xubA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 29.0 | 3.22e-01 | 81.1% | 64.1% |
| 2nykA01 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.53 | 40.0 | 3.44e-01 | 97.9% | 51.4% |
| 2uuqA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.52 | 43.0 | 2.86e-01 | 90.5% | 37.1% |
| 2ijlB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 41.0 | 3.94e-01 | 85.3% | 79.8% |
| 4twgC00 | 3.40.980.10 | Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain | 0.51 | 32.0 | 2.75e-01 | 94.7% | 38.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3771989 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.55 | 37.0 | 3.29e-01 | 76.8% | 48.9% |
| 4025655 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.55 | 35.0 | 3.52e-01 | 73.7% | 64.2% |
| 5036014 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.54 | 35.0 | 3.52e-01 | 75.8% | 65.3% |
| 4463557 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.53 | 36.0 | 3.64e-01 | 76.8% | 69.5% |
| 3538408 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.53 | 35.0 | 3.53e-01 | 75.8% | 67.4% |
| 4178886 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.53 | 36.0 | 3.55e-01 | 76.8% | 66.0% |
| 3755415 | 2484.1.1.236 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27940 | 0.52 | 39.0 | 3.04e-01 | 78.9% | 85.2% |
| 4159140 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.52 | 41.0 | 2.59e-01 | 84.2% | 47.4% |
| 3923738 | 5048.1.1.1 ↗ | alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP | 0.51 | 40.0 | 3.04e-01 | 88.4% | 75.8% |