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NC_018275.1__YP_006560616.1__X__00066
Bact-VirNC_018275.1__YP_006560616.1__X__00066
Identity
- Accession:
- NC_018275 ↗
- Kingdom:
- phage
Quality
87.8
mean pLDDT
Taxonomy
TaxID: 1168548
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-31
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4u04B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.96 | 87.0 | 6.10e-01 | 100.0% | 36.4% |
| 4c91A03 | 1.20.58.2150 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.92 | 77.0 | 4.74e-01 | 100.0% | 17.9% |
| 3ilxA02 | 1.10.287.2170 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.91 | 77.0 | 6.96e-01 | 100.0% | 70.5% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.90 | 76.0 | 6.06e-01 | 100.0% | 50.8% |
| 5jc3A02 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.88 | 73.0 | 4.83e-01 | 100.0% | 25.4% |
| 1yzmA00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.87 | 71.0 | 6.43e-01 | 100.0% | 69.6% |
| 3zpjA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.87 | 73.0 | 4.09e-01 | 100.0% | 9.3% |
| 4rngC00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.86 | 70.0 | 5.25e-01 | 100.0% | 38.6% |
| 3agtA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.83 | 64.0 | 4.32e-01 | 100.0% | 24.1% |
| 3k59A06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.82 | 66.0 | 5.98e-01 | 100.0% | 68.1% |
| 3hjjC00 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.79 | 63.0 | 3.95e-01 | 100.0% | 25.9% |
| 2nr4A02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.73 | 57.0 | 4.90e-01 | 100.0% | 55.2% |
| 2a2cA03 | 1.20.1440.340 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.73 | 59.0 | 3.95e-01 | 100.0% | 25.4% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.73 | 58.0 | 4.46e-01 | 100.0% | 64.7% |
| 4j7zF00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.73 | 60.0 | 4.37e-01 | 100.0% | 40.4% |
| 3nkuA00 | 1.10.357.170 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.72 | 56.0 | 3.44e-01 | 96.8% | 15.3% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.71 | 53.0 | 4.53e-01 | 100.0% | 48.4% |
| 4efcA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.70 | 55.0 | 4.53e-01 | 96.8% | 47.5% |
| 1vbgA04 | 1.10.189.10 | Mainly Alpha › Orthogonal Bundle › Pyruvate Phosphate di-kinase; domain 2 › Pyruvate Phosphate Dikinase, domain 2 | 0.70 | 54.0 | 4.55e-01 | 100.0% | 52.4% |
| 2qs7A00 | 3.40.1260.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like | 0.68 | 56.0 | 3.67e-01 | 100.0% | 21.7% |
| 2yi9A05 | 1.20.1270.270 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › VP1, C-terminal extension domain | 0.65 | 46.0 | 3.69e-01 | 100.0% | 35.1% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 43.0 | 3.93e-01 | 100.0% | 47.7% |
| 3h3aA04 | 1.10.246.80 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.62 | 46.0 | 4.02e-01 | 83.9% | 56.0% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 48.0 | 3.66e-01 | 96.8% | 92.8% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3304429 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.98 | 90.0 | 6.83e-01 | 100.0% | 47.7% |
| 5004728 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.98 | 90.0 | 6.03e-01 | 100.0% | 31.0% |
| 4180661 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.98 | 88.0 | 6.04e-01 | 100.0% | 32.6% |
| 5035839 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.96 | 85.0 | 6.29e-01 | 100.0% | 41.3% |
| 5019369 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.94 | 81.0 | 4.54e-01 | 100.0% | 9.5% |
| 3976441 | 633.10.1.0 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like | 0.90 | 74.0 | 4.90e-01 | 100.0% | 24.8% |
| 3884349 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.89 | 75.0 | 4.98e-01 | 100.0% | 24.8% |
| 4962483 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.89 | 76.0 | 4.55e-01 | 100.0% | 15.1% |
| 3673272 | 2003.1.5.31 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS | 0.87 | 71.0 | 3.93e-01 | 100.0% | 7.5% |
| 4988832 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.87 | 70.0 | 5.67e-01 | 100.0% | 47.7% |
| 3209183 | 192.31.1.0 ↗ | alpha bundles › Long alpha-hairpin › CP12 › CP12 | 0.82 | 64.0 | 5.98e-01 | 100.0% | 68.9% |
| 4995828 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.80 | 67.0 | 3.96e-01 | 100.0% | 42.7% |
| 3396848 | 633.10.1.0 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like | 0.79 | 63.0 | 4.33e-01 | 100.0% | 39.5% |
| 4490524 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.77 | 62.0 | 3.67e-01 | 100.0% | 11.9% |
| 3307959 | 3835.1.1.3 ↗ | alpha bundles › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein › DUF842 | 0.75 | 62.0 | 4.93e-01 | 96.8% | 49.2% |
| 4282998 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 58.0 | 4.08e-01 | 100.0% | 25.8% |
| 4199769 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.73 | 57.0 | 3.52e-01 | 100.0% | 14.1% |
| 4594089 | 5039.1.1.1 ↗ | alpha bundles › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › COX3 | 0.72 | 55.0 | 3.39e-01 | 100.0% | 12.7% |