←Back to structures
NC_018279.1__YP_006560826.1__B619_gp20__00020
Bact-VirNC_018279.1__YP_006560826.1__B619_gp20__00020
Identity
- Accession:
- NC_018279 ↗
- Kingdom:
- phage
Quality
87.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-125
Domain cluster:
representative
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kxgA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.71 | 51.0 | 5.32e-01 | 84.3% | 81.1% |
| 1lshA01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.70 | 60.0 | 4.36e-01 | 92.2% | 57.8% |
| 1lshA03 | 2.20.50.20 | Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3 | 0.67 | 47.0 | 4.87e-01 | 73.5% | 90.8% |
| 3bb9B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.66 | 51.0 | 4.77e-01 | 81.4% | 96.8% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 38.0 | 4.46e-01 | 76.5% | 82.6% |
| 3cmbA00 | 2.40.400.10 | Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like | 0.66 | 50.0 | 3.67e-01 | 79.4% | 60.4% |
| 2i99A01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.65 | 52.0 | 4.58e-01 | 85.3% | 68.7% |
| 3mg1B02 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 52.0 | 4.87e-01 | 86.3% | 93.6% |
| 3ff2A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 49.0 | 4.68e-01 | 80.4% | 93.2% |
| 2oojA00 | 2.40.350.10 | Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like | 0.64 | 51.0 | 4.67e-01 | 84.3% | 69.5% |
| 3fsdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 51.0 | 4.87e-01 | 87.3% | 97.5% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 36.0 | 4.23e-01 | 75.5% | 83.3% |
| 2q03A00 | 2.40.350.10 | Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like | 0.63 | 50.0 | 4.65e-01 | 86.3% | 97.0% |
| 2r4iA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 51.0 | 4.80e-01 | 87.3% | 93.5% |
| 4mp8A01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.63 | 51.0 | 4.39e-01 | 87.3% | 87.0% |
| 1wleA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.62 | 44.0 | 3.09e-01 | 72.5% | 87.7% |
| 1sesA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.62 | 43.0 | 3.08e-01 | 72.5% | 86.8% |
| 1mmuA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.61 | 53.0 | 3.70e-01 | 97.1% | 97.1% |
| 3gkeA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.60 | 53.0 | 4.20e-01 | 98.0% | 55.2% |
| 2b1xB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 52.0 | 4.42e-01 | 98.0% | 95.8% |
| 1tu1A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.59 | 43.0 | 3.91e-01 | 92.2% | 55.6% |
| 1t3qB04 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.58 | 41.0 | 3.36e-01 | 72.5% | 63.4% |
| 3zh5A00 | 2.40.128.710 | Mainly Beta › Beta Barrel › Lipocalin › Surface-adhesin protein E | 0.58 | 48.0 | 4.40e-01 | 97.1% | 69.7% |
| 3exzB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 40.0 | 3.58e-01 | 72.5% | 93.9% |
| 2fwvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 50.0 | 4.08e-01 | 97.1% | 77.9% |
| 4kx7A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.56 | 44.0 | 3.49e-01 | 85.3% | 39.7% |
| 3zt9A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.55 | 39.0 | 3.22e-01 | 72.5% | 66.7% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.55 | 49.0 | 4.39e-01 | 100.0% | 82.3% |
| 2e3nA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 49.0 | 3.78e-01 | 100.0% | 90.0% |
| 6f1uK02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.54 | 49.0 | 4.32e-01 | 99.0% | 79.3% |
| 2i9wA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 47.0 | 3.96e-01 | 98.0% | 60.2% |
| 2r2cB00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 38.0 | 3.74e-01 | 84.3% | 68.8% |
| 2kvoA01 | 2.40.30.220 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 | 0.53 | 37.0 | 3.74e-01 | 72.5% | 85.6% |
| 1ut7B01 | 2.170.150.80 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain | 0.53 | 39.0 | 3.66e-01 | 77.5% | 78.4% |
| 4dkkA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 35.0 | 3.99e-01 | 94.1% | 94.6% |
| 2cy9B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 47.0 | 4.29e-01 | 97.1% | 96.2% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 47.0 | 3.98e-01 | 100.0% | 62.9% |
| 2gtlO02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 46.0 | 4.02e-01 | 100.0% | 66.9% |
| 1em2A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 46.0 | 3.66e-01 | 99.0% | 51.9% |
| 1nnvA01 | 3.10.450.140 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › dsDNA mimic, putative | 0.52 | 36.0 | 3.70e-01 | 71.6% | 100.0% |
| 1dr9A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 33.0 | 3.45e-01 | 86.3% | 68.4% |
| 4w78F00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 36.0 | 3.36e-01 | 84.3% | 56.7% |
| 4w78G00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 36.0 | 3.10e-01 | 71.6% | 100.0% |
| 2ivfC00 | 2.60.40.1190 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 40.0 | 3.19e-01 | 100.0% | 40.2% |
| 1sr9A02 | 3.30.160.270 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain | 0.51 | 39.0 | 3.37e-01 | 81.4% | 64.6% |
| 4l1nA00 | 2.40.128.660 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 | 0.50 | 40.0 | 3.49e-01 | 87.3% | 72.0% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4561192 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.70 | 52.0 | 5.77e-01 | 99.0% | 100.0% |
| 3466996 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.68 | 53.0 | 5.00e-01 | 82.4% | 90.0% |
| 3964215 | 897.2.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Protein E › Protein E › Adhesin_E | 0.67 | 56.0 | 5.37e-01 | 98.0% | 78.3% |
| 3493155 | 5087.3.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd | 0.67 | 58.0 | 3.99e-01 | 92.2% | 37.5% |
| 2765234 | 243.3.1.12 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI | 0.66 | 53.0 | 5.47e-01 | 88.2% | 94.8% |
| 3960625 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.63 | 52.0 | 4.61e-01 | 89.2% | 93.3% |
| 3657409 | 7026.1.1.0 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 | 0.63 | 47.0 | 3.67e-01 | 77.5% | 57.3% |
| 6389 | 243.1.1.28 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 | 0.63 | 51.0 | 4.81e-01 | 87.3% | 94.3% |
| 4933284 | 3692.1.1.1 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall | 0.63 | 51.0 | 4.53e-01 | 87.3% | 90.3% |
| 3280539 | 243.1.1.28 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 | 0.62 | 50.0 | 4.66e-01 | 87.3% | 96.2% |
| 3595344 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.62 | 53.0 | 3.64e-01 | 97.1% | 94.6% |
| 3283278 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.62 | 50.0 | 4.63e-01 | 89.2% | 96.3% |
| 4254680 | 7026.1.1.5 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD | 0.61 | 45.0 | 3.52e-01 | 78.4% | 58.7% |
| 3724000 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.60 | 44.0 | 4.17e-01 | 77.5% | 75.8% |
| 4929665 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 41.0 | 3.63e-01 | 72.5% | 71.0% |
| 3395269 | 5.1.3.147 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Beta-prop_ATRN-LZTR1 | 0.58 | 50.0 | 3.30e-01 | 92.2% | 33.3% |
| 3496336 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 50.0 | 3.24e-01 | 94.1% | 34.0% |
| 3748213 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.58 | 52.0 | 3.80e-01 | 100.0% | 39.6% |
| 3786132 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.57 | 43.0 | 3.81e-01 | 77.5% | 68.3% |
| 3721032 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.57 | 47.0 | 4.23e-01 | 92.2% | 90.7% |
| 2492102 | 897.2.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Protein E › Protein E › Adhesin_E | 0.57 | 47.0 | 4.18e-01 | 97.1% | 61.9% |
| 3239667 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.57 | 41.0 | 2.49e-01 | 74.5% | 19.0% |
| 3332026 | 331.3.1.28 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 | 0.56 | 48.0 | 3.92e-01 | 99.0% | 51.1% |
| 1388524 | 243.17.1.1 ↗ | a+b two layers › Cystatin-like › C-terminal domain of PatG › C-terminal domain of PatG › PatG_C | 0.56 | 45.0 | 4.14e-01 | 86.3% | 67.7% |
| 4019136 | 708.1.1.10 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › SWI-SNF_Ssr4_N | 0.55 | 41.0 | 3.45e-01 | 78.4% | 77.8% |
| 5073454 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 37.0 | 3.67e-01 | 84.3% | 66.7% |
| 3907198 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.54 | 48.0 | 3.77e-01 | 95.1% | 99.5% |
| 4025435 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.54 | 48.0 | 3.92e-01 | 100.0% | 76.3% |
| 3359021 | 5.1.5.86 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Kelch_1 | 0.53 | 43.0 | 3.03e-01 | 87.3% | 32.5% |
| 4927374 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 47.0 | 3.12e-01 | 96.1% | 30.0% |
| 3812932 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.53 | 44.0 | 3.71e-01 | 94.1% | 54.1% |
| 3452408 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.53 | 42.0 | 3.03e-01 | 87.3% | 30.6% |
| 3809890 | 331.3.1.28 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 | 0.52 | 47.0 | 3.64e-01 | 99.0% | 58.9% |
| 3615659 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.52 | 45.0 | 3.72e-01 | 98.0% | 58.4% |
| 3288253 | 1.1.13.55 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF4873 | 0.51 | 37.0 | 3.92e-01 | 75.5% | 96.7% |
| 4371290 | 9.3.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C | 0.51 | 45.0 | 4.27e-01 | 100.0% | 84.7% |
| 4017305 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.50 | 43.0 | 3.09e-01 | 94.1% | 42.7% |
| 3580295 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.50 | 41.0 | 3.42e-01 | 98.0% | 50.8% |