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NC_018452.1__YP_006589953.1__B862_gp60__00023

Bact-Vir

NC_018452.1__YP_006589953.1__B862_gp60__00023

Identity

Accession:
NC_018452 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lessievirus› Burkholderia_phage_DC1

TaxID: 2881398

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 60-137
PDB
Domain cluster: rep: JN585957.1__AEY69651.1__PEp14_00062__00062__D112-188
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 55.0 6.30e-01 100.0% 98.2%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.75 51.0 5.84e-01 98.7% 94.8%
1vq8T00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 54.0 4.62e-01 100.0% 50.4%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 54.0 4.42e-01 100.0% 46.3%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 54.0 5.76e-01 98.7% 100.0%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.68 47.0 3.65e-01 98.7% 32.2%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 53.0 5.16e-01 100.0% 76.7%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 53.0 5.65e-01 97.4% 98.5%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 51.0 5.55e-01 97.4% 100.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 49.0 5.16e-01 94.9% 92.6%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 47.0 4.64e-01 100.0% 72.1%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 33.0 3.98e-01 74.4% 79.6%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 5.15e-01 100.0% 94.4%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.60 49.0 4.93e-01 100.0% 88.3%
2qw7C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.55 37.0 3.54e-01 70.5% 88.4%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 33.0 3.60e-01 80.8% 81.0%
2jzlA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.52 43.0 3.87e-01 94.9% 87.4%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 3.75e-01 94.9% 96.8%
1tzdA00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.51 39.0 2.88e-01 87.2% 82.3%
3ayjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 41.0 2.68e-01 92.3% 49.9%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.50 32.0 3.41e-01 83.3% 74.6%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3924377 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 51.0 5.94e-01 97.4% 98.2%
4964768 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 53.0 5.93e-01 100.0% 96.7%
5028926 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.74 54.0 4.39e-01 100.0% 42.9%
3443078 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.74 60.0 4.56e-01 100.0% 38.9%
5054535 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.73 55.0 4.83e-01 100.0% 55.5%
5037204 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.73 54.0 4.60e-01 100.0% 50.0%
5050857 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.73 54.0 4.49e-01 100.0% 46.2%
4071168 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.73 54.0 4.66e-01 100.0% 52.2%
3340031 4.1.1.295 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.73 54.0 4.39e-01 100.0% 44.4%
5065841 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.73 50.0 4.87e-01 100.0% 65.5%
4601878 4.1.1.295 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.73 54.0 4.49e-01 100.0% 46.9%
4994549 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.72 54.0 4.15e-01 100.0% 37.0%
3487003 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 55.0 4.50e-01 100.0% 45.9%
4180317 4.1.1.295 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.72 54.0 4.54e-01 100.0% 48.8%
4417349 4.1.1.295 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.72 54.0 4.81e-01 100.0% 58.1%
3933788 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 50.0 5.63e-01 100.0% 95.0%
3934126 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 50.0 5.60e-01 97.4% 95.0%
4854141 4.1.1.295 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.71 52.0 4.32e-01 100.0% 46.2%
3867384 4.1.1.50 ↗ beta barrels › SH3 › SH3 › SH3 › MIB_HERC2 0.70 60.0 5.98e-01 100.0% 88.7%
3578208 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 44.0 5.10e-01 93.6% 90.9%
3240407 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.70 51.0 5.40e-01 97.4% 85.7%
4977702 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.69 47.0 4.61e-01 100.0% 64.7%
3810562 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.53e-01 98.7% 85.3%
4943161 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.69 53.0 4.42e-01 100.0% 48.5%
3933892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 51.0 5.70e-01 98.7% 100.0%
3583296 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 55.0 5.73e-01 97.4% 94.3%
3682355 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 36.0 4.22e-01 73.1% 70.9%
3942573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 47.0 5.27e-01 97.4% 96.6%
3787441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 52.0 4.98e-01 96.2% 70.0%
3933539 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 50.0 5.47e-01 100.0% 92.3%
1778160 109.1.1.6 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 0.68 48.0 3.39e-01 98.7% 24.2%
3991896 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 57.0 5.30e-01 100.0% 74.7%
3940362 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 50.0 3.54e-01 100.0% 26.6%
3631298 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 53.0 5.44e-01 100.0% 88.0%
3623785 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 51.0 5.27e-01 97.4% 85.3%
4041376 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 49.0 4.89e-01 100.0% 77.5%
4026408 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.66 48.0 4.44e-01 100.0% 60.0%
4218488 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 51.0 5.10e-01 98.7% 81.2%
4303967 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.38e-01 94.9% 92.2%
136401 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.65 45.0 4.08e-01 100.0% 52.3%
3482646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 3.82e-01 100.0% 34.0%
4377781 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 50.0 5.01e-01 100.0% 86.3%
3268482 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.62 53.0 5.05e-01 100.0% 80.0%
3672735 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.62 45.0 4.87e-01 100.0% 93.8%
3969959 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 52.0 5.01e-01 98.7% 82.2%
4415790 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.60 53.0 3.64e-01 100.0% 34.7%
4950222 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.60 54.0 4.80e-01 100.0% 80.0%
3859965 4.1.1.107 ↗ beta barrels › SH3 › SH3 › SH3 › XRN1_D1 0.60 53.0 3.98e-01 98.7% 68.9%
3700454 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 51.0 4.48e-01 100.0% 98.3%
3482359 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 50.0 4.46e-01 100.0% 80.9%
3265716 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 44.0 4.25e-01 91.0% 92.2%
4031151 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.53 43.0 4.41e-01 96.2% 96.0%
3716892 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 42.0 3.70e-01 89.7% 93.5%
3447437 4.18.1.1 ↗ beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.52 46.0 3.87e-01 100.0% 82.2%
4032675 325.1.7.52 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › PF25997 0.52 39.0 3.89e-01 87.2% 77.5%