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NC_018452.1__YP_006589969.1__B862_gp44__00039

Bact-Vir

NC_018452.1__YP_006589969.1__B862_gp44__00039

Identity

Accession:
NC_018452 ↗
Kingdom:
phage

Quality

95.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lessievirus› Burkholderia_phage_DC1

TaxID: 2881398

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-202
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09195.18 best Endonuc-BglII 141.0 5.70e-41 98.5% 99.4%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sdoA00 3.40.91.20 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.98 92.0 9.41e-01 100.0% 99.0%
1d2iA00 3.40.91.20 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.89 73.0 7.07e-01 100.0% 76.6%
3odhA00 3.40.91.20 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.81 68.0 6.92e-01 100.0% 88.7%
3bamA00 3.40.91.20 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.80 69.0 6.92e-01 100.0% 86.9%
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.62 25.0 3.33e-01 95.5% 66.1%
1h4xA00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.61 27.0 3.58e-01 72.6% 73.9%
2b99C00 3.40.50.960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase 0.56 30.0 3.41e-01 93.5% 65.8%
1u9yA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 34.0 3.94e-01 89.6% 82.0%
4i3gA02 3.40.50.1700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain 0.54 41.0 4.12e-01 100.0% 76.8%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
11010 2008.1.1.39 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Endonuc-BglII 0.98 92.0 9.41e-01 100.0% 99.0%
5030935 2008.1.1.39 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Endonuc-BglII 0.96 83.0 8.87e-01 100.0% 98.9%
140941 2008.1.1.8 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › BamHI 0.81 68.0 6.92e-01 100.0% 88.7%
11007 2008.1.1.8 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › BamHI 0.81 65.0 6.56e-01 100.0% 83.0%
5028457 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.74 36.0 4.33e-01 72.6% 67.1%
5038985 2008.1.1.8 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › BamHI 0.72 69.0 6.52e-01 100.0% 89.6%
5064022 2005.1.1.13 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.68 28.0 3.06e-01 91.5% 44.1%
4965092 2008.1.1.228 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF5787 0.62 36.0 3.58e-01 73.1% 54.1%
3188513 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.58 30.0 3.12e-01 100.0% 51.9%
5026141 2487.1.1.18 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Peptidase_S66C 0.52 32.0 3.59e-01 100.0% 76.5%
3508213 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 38.0 3.98e-01 74.6% 98.3%