←Back to structures

NC_018452.1__YP_006589992.1__B862_gp21__00062

Bact-Vir

Identity

Accession:: NC_018452 ↗
Kingdom:: phage

Quality

79.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lessievirus› Burkholderia_phage_DC1

TaxID: 2881398

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 22-115

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3layF00	1.20.120.1490	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.62	42.0	4.52e-01	79.8%	83.3%
4abmD00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.61	42.0	4.59e-01	96.8%	85.7%
3uumA00	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.61	36.0	3.38e-01	79.8%	44.3%
4egwA02	1.20.58.340	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region	0.59	38.0	3.55e-01	72.3%	52.1%
1m62A00	1.20.58.120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain	0.57	34.0	3.49e-01	93.6%	60.9%
3fppA03	6.10.140.1990	Special › Helix non-globular › Helix Hairpins ›	0.56	41.0	4.26e-01	97.9%	83.0%
4mtxD00	1.10.287.130	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain	0.54	40.0	4.08e-01	100.0%	77.9%
1wleA01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.52	41.0	3.86e-01	97.9%	69.3%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3177237	106.1.1.0 ↗	alpha arrays › Globin-like › Globin-like › Globin-like	0.59	36.0	3.18e-01	84.0%	39.3%
4979210	7566.1.1.2 ↗	a/b three-layered sandwiches › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › GTP-bdg_N	0.56	33.0	2.65e-01	100.0%	29.2%
3231462	632.8.1.2 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › Alpha-2-MRAP_C	0.55	39.0	4.05e-01	74.5%	77.8%
3849769	3755.3.1.295 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WWC1	0.53	39.0	3.48e-01	100.0%	53.3%
3781013	3291.1.1.170 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › WWC1	0.53	39.0	3.44e-01	100.0%	53.3%
4021416	109.4.1.356 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans	0.53	47.0	2.96e-01	100.0%	89.3%
5081054	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.52	38.0	3.22e-01	79.8%	45.0%
3757451	3755.3.1.297 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9	0.52	44.0	3.72e-01	93.6%	78.1%
3194767	109.4.1.356 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans	0.51	44.0	3.00e-01	98.9%	95.0%
3904307	3755.4.1.70 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › KIF9	0.51	41.0	3.62e-01	87.2%	73.3%
3550496	4970.1.1.4 ↗	alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › RPOL_N	0.51	37.0	2.99e-01	100.0%	38.9%