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NC_018454.1__YP_006590045.1__B887_gp40__00040

Bact-Vir

NC_018454.1__YP_006590045.1__B887_gp40__00040

Identity

Accession:
NC_018454 ↗
Kingdom:
phage

Quality

79.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-98
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08748.18 best Phage_TAC_4 65.1 1.00e-17 100.0% 82.3%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hl8A03 1.20.1280.70 Mainly Alpha › Up-down Bundle › Monooxygenase › Exonuclease ExoI, domain 3 0.57 34.0 3.86e-01 94.0% 80.6%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 34.0 3.53e-01 97.6% 65.8%
4uavA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 39.0 3.96e-01 90.4% 76.5%
1j8bA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.53 35.0 3.46e-01 100.0% 62.0%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.35e-01 100.0% 60.0%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5039151 3103.1.1.0 alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN 0.70 61.0 5.75e-01 97.6% 100.0%
3586672 6050.1.1.0 a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.62 55.0 5.13e-01 100.0% 83.8%
5032585 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.54 44.0 3.31e-01 94.0% 95.2%
3511169 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.50 35.0 3.48e-01 100.0% 70.6%