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NC_018843.1__YP_006906744.1__SSU5_112__00112

Bact-Vir

NC_018843.1__YP_006906744.1__SSU5_112__00112

Identity

Accession:
NC_018843 ↗
Kingdom:
phage

Quality

94.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salmonella_phage_SSU5

TaxID: 1177632

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-66
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kqzA01 1.10.2020.20 Mainly Alpha › Orthogonal Bundle › uronate isomerase, domain 2, chain A › 0.64 48.0 3.88e-01 100.0% 40.5%
1cy5A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.61 52.0 4.64e-01 100.0% 72.8%
4ikmA02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.59 51.0 4.48e-01 100.0% 73.1%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.59 41.0 4.29e-01 82.0% 81.8%
3h7iA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.59 47.0 4.45e-01 91.8% 96.1%
3nhiA02 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.58 50.0 3.84e-01 100.0% 49.3%
2l7kA00 1.10.10.1850 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sporulation protein-like 0.57 41.0 3.85e-01 77.0% 73.7%
1ej5A00 3.90.810.10 Alpha Beta › Alpha-Beta Complex › SerineThreonine-protein kinase PAK-alpha; Chain A › CRIB domain 0.56 43.0 3.64e-01 83.6% 66.4%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.56 44.0 3.75e-01 91.8% 69.9%
1pk1B00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.56 46.0 4.46e-01 96.7% 94.3%
1pvmA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.53 45.0 3.26e-01 95.1% 60.1%
4x28C03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 42.0 3.38e-01 95.1% 79.0%
5af7B03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 43.0 3.36e-01 95.1% 81.1%
2nyvA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 45.0 4.44e-01 100.0% 93.8%
2uv4A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 42.0 3.41e-01 98.4% 74.8%
1pmiA02 1.10.441.10 Mainly Alpha › Orthogonal Bundle › Phosphomannose Isomerase; domain 2 › Phosphomannose Isomerase, domain 2 0.52 41.0 3.30e-01 91.8% 81.6%
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 38.0 3.39e-01 82.0% 53.2%
1rx0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 42.0 3.21e-01 95.1% 63.9%
1nv8B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.51 42.0 4.01e-01 100.0% 78.9%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3801946 101.1.2.462 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7647 0.68 56.0 4.26e-01 100.0% 37.4%
3890430 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.68 58.0 5.02e-01 100.0% 67.0%
4562601 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.67 59.0 3.51e-01 100.0% 13.1%
3709686 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 44.0 3.95e-01 83.6% 65.9%
3467238 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.58 46.0 3.80e-01 90.2% 94.8%
3740 601.9.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Bacterial GAP domain › Bacterial GAP domain 0.57 44.0 3.55e-01 83.6% 93.3%
3707405 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 43.0 3.61e-01 83.6% 80.0%
3692487 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.55 39.0 3.31e-01 88.5% 45.0%
4159969 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.55 39.0 3.33e-01 75.4% 54.3%
5020623 601.7.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.55 47.0 3.87e-01 100.0% 89.1%
3723227 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.54 40.0 3.67e-01 88.5% 60.0%
4002075 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 37.0 3.66e-01 72.1% 73.8%
3950857 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 42.0 3.42e-01 91.8% 75.6%
3943247 102.1.1.121 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_SMF 0.53 41.0 4.10e-01 91.8% 86.2%
3266959 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.52 43.0 3.69e-01 91.8% 99.0%
3274642 3687.1.1.1 ↗ alpha bundles › NADPH-cytochrome p450 reductase helical insertion domain › NADPH-cytochrome p450 reductase helical insertion domain › NADPH-cytochrome p450 reductase helical insertion domain › FAD_binding_1 0.51 42.0 3.38e-01 100.0% 52.9%
3797643 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 35.0 2.88e-01 75.4% 77.7%
3741158 632.3.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain 0.51 34.0 3.77e-01 77.0% 97.8%