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NC_018843.1__YP_006906747.1__SSU5_115__00115

Bact-Vir

NC_018843.1__YP_006906747.1__SSU5_115__00115

Identity

Accession:
NC_018843 ↗
Kingdom:
phage

Quality

93.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salmonella_phage_SSU5

TaxID: 1177632

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-92
PDB
Domain cluster: rep: IMGVR_UViG_3300013099_000017-3300013099-Ga0164315_10000001120__D3-81
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w42B02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.70 34.0 2.48e-01 100.0% 17.3%
5bmnA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.59 40.0 4.16e-01 100.0% 73.5%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.57 36.0 2.53e-01 97.7% 19.2%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 4.00e-01 75.9% 87.5%
3zleA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.53 23.0 3.31e-01 93.1% 89.7%
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 39.0 3.54e-01 100.0% 57.5%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 41.0 2.83e-01 87.4% 34.6%
3gmvX00 3.10.450.730 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain 0.52 39.0 3.23e-01 96.6% 44.2%
3zqsA02 3.10.110.20 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › RWD domain-like 0.52 33.0 3.22e-01 87.4% 57.1%
5jh8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 32.0 3.61e-01 100.0% 82.1%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.51 40.0 4.00e-01 98.9% 82.0%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.50 37.0 3.50e-01 100.0% 63.0%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1505941 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.69 37.0 3.46e-01 100.0% 42.5%
4929578 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.64 45.0 4.02e-01 98.9% 53.3%
3734667 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 42.0 3.42e-01 79.3% 86.1%
3917456 5.1.5.93 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.56 39.0 2.52e-01 71.3% 26.8%
3905680 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.56 37.0 2.45e-01 98.9% 15.4%
4666201 865.1.1.0 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.56 43.0 4.26e-01 85.1% 84.2%
3701018 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 43.0 2.98e-01 100.0% 25.2%
3788228 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.54 45.0 3.92e-01 92.0% 61.5%
3740379 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 26.0 3.07e-01 97.7% 66.7%
3613162 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.54 36.0 4.04e-01 92.0% 92.3%
3482975 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.54 41.0 3.60e-01 100.0% 56.0%
5032565 4312.1.1.10 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › YafQ_toxin 0.54 42.0 4.24e-01 98.9% 84.7%
4110294 223.1.1.118 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30448 0.54 43.0 4.12e-01 100.0% 75.0%
3940673 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 4.01e-01 94.3% 80.0%
4951171 809.1.1.0 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.53 35.0 3.84e-01 96.6% 84.3%
3931143 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.53 40.0 3.54e-01 100.0% 56.0%
4611555 865.1.1.0 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.53 42.0 3.87e-01 87.4% 80.9%
3508716 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.52 40.0 3.50e-01 100.0% 53.3%
4975569 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 40.0 3.55e-01 97.7% 56.8%
3742497 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.52 42.0 3.84e-01 100.0% 66.1%
4431016 865.1.1.0 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.52 42.0 3.87e-01 90.8% 77.5%
4994192 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.51 40.0 4.20e-01 96.6% 91.3%
4967379 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.51 42.0 4.27e-01 96.6% 89.4%
3604507 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.51 40.0 3.92e-01 98.9% 77.7%
3178444 220.1.1.112 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 0.51 37.0 3.23e-01 78.2% 78.6%
3588251 6043.1.1.3 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N 0.51 37.0 3.74e-01 93.1% 75.6%
3649824 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.51 40.0 2.77e-01 87.4% 48.6%
5062498 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.51 41.0 4.18e-01 96.6% 89.4%
4965116 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.50 36.0 3.64e-01 100.0% 75.0%