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NC_018857.1__YP_006907740.1__BPS13_0181__00181

Bact-Vir

NC_018857.1__YP_006907740.1__BPS13_0181__00181

Identity

Accession:
NC_018857 ↗
Kingdom:
phage

Quality

80.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Wphvirus› Bacillus_phage_BPS13

TaxID: 1136731

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-43
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zmbA02 6.10.170.10 Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.94 69.0 7.53e-01 76.7% 91.7%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.87 66.0 4.76e-01 81.4% 31.0%
2cr7A01 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.87 63.0 5.46e-01 83.7% 52.4%
2zttA00 6.10.140.720 Special › Helix non-globular › Helix Hairpins › 0.87 66.0 5.43e-01 81.4% 47.9%
1ypxA00 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.81 70.0 4.17e-01 100.0% 46.2%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.78 60.0 4.96e-01 88.4% 47.4%
3qw4B02 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.75 52.0 3.38e-01 74.4% 25.5%
5djsA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.75 55.0 3.84e-01 81.4% 25.2%
2feaA02 3.90.1470.20 Alpha Beta › Alpha-Beta Complex › thrh gene product, domain 2 › 0.74 61.0 4.60e-01 90.7% 75.5%
5o6uB00 3.30.70.2540 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 0.73 52.0 3.42e-01 76.7% 18.1%
2es9A00 1.20.1290.30 Mainly Alpha › Up-down Bundle › AhpD-like › 0.71 52.0 4.06e-01 81.4% 35.0%
4i8oA03 1.10.8.1130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain 0.69 52.0 4.43e-01 81.4% 53.7%
1hr6B02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.63 48.0 3.12e-01 83.7% 51.4%
3zdmB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.63 43.0 4.26e-01 79.1% 68.0%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.59 43.0 3.69e-01 79.1% 43.0%
1vfrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.59 40.0 2.69e-01 79.1% 38.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033902 4146.1.1.1 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › YqgQ-like 0.95 71.0 6.25e-01 79.1% 56.7%
3596839 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.95 69.0 6.28e-01 76.7% 60.0%
3472821 5.1.4.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.94 65.0 3.66e-01 76.7% 7.7%
3821280 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.94 69.0 5.71e-01 83.7% 47.1%
3511354 4146.1.1.0 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.94 66.0 6.89e-01 74.4% 80.0%
3498703 219.1.1.41 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C78 0.93 72.0 4.10e-01 81.4% 10.0%
3668207 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.93 70.0 4.38e-01 81.4% 17.9%
3818442 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.91 66.0 5.23e-01 83.7% 41.2%
3404899 509.1.1.13 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › SAGA-Tad1 0.91 64.0 5.32e-01 83.7% 45.7%
3437288 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.90 65.0 5.26e-01 83.7% 44.0%
3301471 5067.1.1.17 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › AtTam38 0.89 67.0 4.88e-01 81.4% 33.6%
3378995 108.1.1.111 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › DUF7952 0.88 62.0 5.67e-01 83.7% 58.2%
3868 4204.1.1.1 ↗ alpha bundles › AF0941-like › AF0941-like › AF0941-like › AF0941-like 0.87 66.0 4.78e-01 81.4% 31.5%
3282441 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.85 75.0 4.91e-01 100.0% 25.6%
3440587 109.4.1.1262 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.83 62.0 4.07e-01 81.4% 21.2%
4520075 7510.1.1.3 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › FA_synthesis 0.75 64.0 4.19e-01 95.3% 23.4%
3408001 196.1.1.1 ↗ alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS 0.67 48.0 3.48e-01 81.4% 26.9%
3318685 284.1.3.2 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.62 49.0 3.66e-01 86.0% 83.8%