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NC_019401.1__YP_006987205.1__GAP32_102__00103

Bact-Vir

NC_019401.1__YP_006987205.1__GAP32_102__00103

Identity

Accession:
NC_019401 ↗
Kingdom:
phage

Quality

70.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mimasvirus› Cronobacter_phage_vB_CsaM_GAP32

TaxID: 1141136

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-62
PDB
D2 high residues 74-136
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hf2A02 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.81 72.0 6.04e-01 100.0% 68.9%
1k8fA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.80 71.0 5.28e-01 100.0% 50.3%
3bh7B01 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.78 68.0 4.84e-01 100.0% 36.8%
3petA00 2.160.20.120 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.75 65.0 4.52e-01 100.0% 59.2%
1rwrA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.73 63.0 4.10e-01 100.0% 34.3%
4w8qA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.72 63.0 4.29e-01 100.0% 43.6%
1w5dA02 3.50.80.20 Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13 0.63 44.0 3.78e-01 73.0% 83.3%
1g9sA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 42.0 3.17e-01 90.5% 62.1%
2aeeB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 41.0 2.97e-01 90.5% 61.6%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4935712 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.88 81.0 6.06e-01 100.0% 49.0%
3596944 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.86 76.0 5.59e-01 100.0% 39.4%
4971789 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.83 76.0 5.90e-01 100.0% 51.5%
3165270 207.2.1.10 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin 0.83 73.0 4.77e-01 98.4% 28.8%
3546698 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.83 75.0 5.51e-01 100.0% 54.4%
4406918 207.6.1.16 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › FARP 0.83 75.0 5.84e-01 100.0% 55.4%
4980606 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.82 73.0 5.32e-01 100.0% 51.8%
3877533 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.81 67.0 5.95e-01 100.0% 63.3%
5006686 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.81 74.0 5.97e-01 100.0% 57.4%
3769689 207.14.1.3 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › DUF5585 0.81 68.0 6.48e-01 100.0% 78.7%
4497421 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.81 72.0 6.42e-01 100.0% 78.9%
5037365 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.80 73.0 4.88e-01 100.0% 29.3%
2516583 207.14.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.80 70.0 6.27e-01 100.0% 75.6%
3571723 207.4.1.5 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › PMG, Keratin_B2_2 0.79 69.0 5.31e-01 100.0% 51.7%
3629898 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.79 63.0 6.00e-01 87.3% 100.0%
3963707 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.78 69.0 6.41e-01 100.0% 78.8%
3713639 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.78 68.0 4.55e-01 100.0% 30.4%
3997590 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.78 61.0 6.29e-01 85.7% 100.0%
3741632 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.77 67.0 5.80e-01 100.0% 64.0%
5033306 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.76 67.0 5.24e-01 100.0% 52.6%
3708837 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.74 68.0 4.87e-01 100.0% 45.1%
3263729 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.74 64.0 4.07e-01 100.0% 28.9%
3336085 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.73 66.0 4.57e-01 100.0% 39.4%
7226 207.2.1.15 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › TPS 0.73 63.0 4.10e-01 100.0% 34.3%
4028784 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.72 61.0 5.27e-01 98.4% 66.7%
4884477 207.2.1.4 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase 0.70 60.0 4.31e-01 100.0% 58.3%
3803729 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.61 51.0 5.15e-01 100.0% 96.9%