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NC_019402.1__YP_006987669.1__D858_gp095__00022
Bact-VirNC_019402.1__YP_006987669.1__D858_gp095__00022
Identity
- Accession:
- NC_019402 ↗
- Kingdom:
- phage
Quality
72.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Grimontviridae›
Crifsvirus›
Cronobacter_phage_vB_CsaP_GAP52
TaxID: 1141137
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 20-89
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5nl6B01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.79 | 58.0 | 4.80e-01 | 77.1% | 50.4% |
| 1hcyA02 | 1.10.1280.10 | Mainly Alpha › Orthogonal Bundle › di-copper center containing domain from catechol oxidase › Di-copper center containing domain from catechol oxidase | 0.52 | 38.0 | 2.61e-01 | 75.7% | 74.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3291916 | 2492.1.1.4 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.88 | 65.0 | 4.05e-01 | 75.7% | 18.7% |
| 3476610 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.78 | 57.0 | 4.63e-01 | 77.1% | 46.9% |
| None | — | 0.72 | 54.0 | 3.33e-01 | 78.6% | 24.3% | |
| 3670976 | 603.1.1.5 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N | 0.69 | 54.0 | 4.21e-01 | 82.9% | 41.4% |
| 3473000 | 3352.1.1.12 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › Dpy19 | 0.68 | 53.0 | 3.10e-01 | 82.9% | 26.7% |
| 3627844 | 3331.1.1.8 ↗ | a+b two layers › Uncharacterized protein yibL › Uncharacterized protein yibL › Uncharacterized protein yibL › RRP36 | 0.67 | 56.0 | 4.53e-01 | 91.4% | 66.2% |
| 4992694 | 2003.1.1.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH | 0.66 | 53.0 | 3.96e-01 | 90.0% | 85.4% |
| 3730821 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.65 | 47.0 | 3.23e-01 | 85.7% | 22.6% |
| 3833919 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.65 | 49.0 | 4.29e-01 | 88.6% | 52.7% |
| 3315979 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.61 | 36.0 | 2.80e-01 | 84.3% | 26.5% |
| 3285319 | 4033.1.1.1 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N | 0.60 | 51.0 | 4.12e-01 | 94.3% | 90.0% |
| 3194339 | 109.4.1.1450 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29050 | 0.59 | 48.0 | 2.92e-01 | 90.0% | 70.4% |
| 4405392 | 327.16.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin | 0.58 | 47.0 | 3.06e-01 | 88.6% | 63.9% |