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NC_019406.1__YP_006988292.1__CcrColossus_gp058__00058

Bact-Vir

Identity

Accession:: NC_019406 ↗
Kingdom:: phage

Quality

78.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Colossusvirus› Caulobacter_phage_CcrColossus

TaxID: 1211640

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-79

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2g5gX02	1.10.8.760	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Haem-binding uptake, Tiki superfamily, ChaN, domain 2	0.71	48.0	4.79e-01	71.4%	67.8%
4lzjA02	1.10.8.1080	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.60	48.0	4.36e-01	91.1%	79.7%
4v19K02	1.10.10.250	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain	0.59	49.0	4.54e-01	96.4%	85.3%
4uzzB00	6.10.250.2800	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.59	45.0	4.43e-01	91.1%	84.6%
3k1zA02	1.10.150.720	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Haloacid dehalogenase-like hydrolase	0.58	45.0	4.10e-01	91.1%	72.6%
5dvwA00	1.20.120.1160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.58	47.0	3.62e-01	91.1%	75.0%
1a8rA01	1.10.286.10	Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain	0.57	40.0	3.51e-01	73.2%	56.5%
6z01B01	1.10.10.41	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1	0.57	47.0	4.35e-01	100.0%	80.8%
1ofcX04	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.56	45.0	4.01e-01	100.0%	60.6%
3cf6E01	1.10.8.1240	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.56	40.0	4.33e-01	78.6%	100.0%
2qtlA03	3.40.50.80	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module	0.54	44.0	3.22e-01	91.1%	37.4%
6w6jD01	1.10.1780.10	Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain	0.54	42.0	3.33e-01	91.1%	77.9%
2b6cA02	1.25.40.290	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains	0.50	38.0	3.23e-01	92.9%	47.4%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3224103	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.67	57.0	4.49e-01	100.0%	52.0%
3917482	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.63	48.0	3.60e-01	82.1%	91.4%
3795349	101.1.1.112 ↗	alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg	0.60	49.0	4.46e-01	100.0%	71.8%
None	—		0.58	44.0	2.84e-01	83.9%	16.6%
4996540	181.1.1.1 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N	0.58	47.0	4.25e-01	96.4%	88.2%
None	—		0.56	43.0	2.66e-01	83.9%	55.5%
3844798	604.3.1.0 ↗	alpha bundles › Spectrin repeat-like › BAG domain › BAG domain	0.53	40.0	3.73e-01	80.4%	92.9%
3502186	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	44.0	3.89e-01	100.0%	65.2%
4093386	4973.1.1.0 ↗	alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core	0.53	44.0	4.17e-01	100.0%	80.0%
5021378	109.4.1.5 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1	0.51	41.0	3.35e-01	89.3%	70.9%