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NC_019406.1__YP_006988407.1__CcrColossus_gp173__00173

Bact-Vir

NC_019406.1__YP_006988407.1__CcrColossus_gp173__00173

Identity

Accession:
NC_019406 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Colossusvirus› Caulobacter_phage_CcrColossus

TaxID: 1211640

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-58
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.68 41.0 4.15e-01 100.0% 61.8%
4j6oA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.65 48.0 3.04e-01 78.6% 47.1%
3a7rA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.62 55.0 3.54e-01 98.2% 45.6%
6tdxG01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.56 50.0 3.28e-01 96.4% 85.5%
6mcjA00 1.10.2090.10 Mainly Alpha › Orthogonal Bundle › orange carotenoid protein, domain 2 › Orange carotenoid-binding protein, N-terminal domain 0.55 50.0 3.66e-01 100.0% 57.2%
6cgaC02 1.20.58.860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 38.0 3.44e-01 89.3% 53.8%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.53 40.0 4.10e-01 100.0% 83.6%
4dhxB00 1.10.246.140 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 0.51 33.0 2.97e-01 100.0% 39.6%
2rh8A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 40.0 2.57e-01 89.3% 96.2%
4uw9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.50 40.0 3.71e-01 98.2% 98.8%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 3.22e-01 80.4% 52.4%
2g80A02 1.10.720.60 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.50 38.0 3.55e-01 89.3% 97.4%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3410150 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.71 62.0 6.26e-01 98.2% 100.0%
3781276 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.70 61.0 5.89e-01 100.0% 87.7%
3757366 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.70 58.0 5.26e-01 96.4% 72.5%
3994526 7579.1.1.1 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase 0.68 59.0 3.38e-01 98.2% 10.2%
5027756 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 41.0 4.29e-01 96.4% 70.0%
3192375 7579.1.1.1 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase 0.64 55.0 3.19e-01 100.0% 27.5%
3780445 906.1.1.0 ↗ few secondary structure elements › CCCH zinc finger › CCCH zinc finger › CCCH zinc finger 0.62 38.0 3.98e-01 96.4% 68.0%
5050259 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 46.0 3.16e-01 82.1% 64.3%
3716897 183.1.1.0 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.57 47.0 4.26e-01 89.3% 69.3%
3540239 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.57 46.0 3.81e-01 91.1% 59.0%
4031266 632.2.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA 0.57 39.0 4.04e-01 96.4% 75.9%
4030557 101.1.2.281 ↗ alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.56 48.0 3.57e-01 98.2% 37.9%
4291138 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.55 45.0 3.61e-01 98.2% 44.0%
3535889 110.1.1.4 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › PYRIN 0.54 47.0 4.03e-01 96.4% 66.7%
4244665 2004.1.1.1006 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF29246, PF29248 0.54 39.0 2.26e-01 78.6% 25.5%
3549273 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.53 41.0 3.42e-01 83.9% 48.0%
4992678 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.52 35.0 3.56e-01 100.0% 69.1%
3398951 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.52 47.0 3.41e-01 98.2% 75.7%
4955665 230.1.1.5 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.52 43.0 3.24e-01 100.0% 36.6%
4110761 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.51 39.0 3.29e-01 96.4% 46.7%