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NC_019407.1__YP_006988703.1__CcrMagneto_gp021__00021

Bact-Vir

NC_019407.1__YP_006988703.1__CcrMagneto_gp021__00021

Identity

Accession:
NC_019407 ↗
Kingdom:
phage

Quality

69.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Shapirovirus› Caulobacter_virus_Magneto

TaxID: 1211642

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-70
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3htmA02 6.10.250.3030 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.77 43.0 5.13e-01 96.7% 85.0%
5jajA03 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.65 46.0 3.78e-01 93.4% 39.7%
3m5bA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.64 44.0 3.66e-01 100.0% 40.4%
2do9A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.58 45.0 4.10e-01 85.2% 95.2%
5tw1D01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.58 42.0 3.24e-01 78.7% 52.7%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.57 47.0 4.29e-01 93.4% 75.9%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 40.0 3.34e-01 83.6% 51.2%
1rp5A03 3.30.70.2110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 46.0 4.05e-01 95.1% 95.6%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.54 42.0 3.91e-01 85.2% 96.2%
3craB01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.54 42.0 3.74e-01 85.2% 64.0%
1p90A00 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.53 39.0 3.25e-01 82.0% 71.5%
3nnbA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.52 47.0 2.87e-01 100.0% 23.3%
1i9sA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 41.0 2.97e-01 90.2% 81.0%
1qo2A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 42.0 2.92e-01 100.0% 26.7%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3267440 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.77 56.0 4.26e-01 77.0% 60.7%
4437686 109.4.1.1441 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_11, TPR_16 0.71 50.0 3.36e-01 73.8% 36.0%
3236305 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.68 50.0 3.81e-01 100.0% 34.3%
3790364 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.67 49.0 4.11e-01 100.0% 45.7%
3622380 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.65 48.0 3.72e-01 100.0% 36.9%
3593647 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.64 45.0 3.76e-01 96.7% 42.9%
3273227 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.63 51.0 3.65e-01 100.0% 30.0%
3444838 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.63 47.0 3.79e-01 100.0% 40.8%
3419905 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.63 55.0 3.55e-01 100.0% 21.1%
3696701 2003.1.1.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA 0.62 51.0 3.15e-01 90.2% 36.6%
3447119 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.61 54.0 4.04e-01 100.0% 40.7%
4056311 1002.1.1.1 ↗ alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB 0.60 55.0 4.29e-01 100.0% 70.2%
4142339 4099.1.1.4 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.60 33.0 2.49e-01 77.0% 22.9%
3607675 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 52.0 3.38e-01 100.0% 32.5%
3601544 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 42.0 2.46e-01 77.0% 57.3%
3968325 2002.1.1.4 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Alpha-amylase 0.57 47.0 2.89e-01 90.2% 48.9%
1114459 109.21.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleopor_Nup85 0.57 45.0 2.95e-01 90.2% 60.1%
3477473 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 51.0 3.08e-01 100.0% 25.5%
3462466 226.1.1.5 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.55 48.0 3.70e-01 100.0% 48.6%
4944914 205.1.1.0 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.55 46.0 4.20e-01 93.4% 100.0%
3600613 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.53 38.0 2.46e-01 75.4% 65.6%
3535009 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 42.0 2.75e-01 93.4% 56.6%
1688723 109.21.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nup96 0.53 44.0 2.96e-01 100.0% 36.5%
3257390 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 37.0 2.42e-01 77.0% 18.1%
3737198 2.1.1.82 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_CSD1 0.51 36.0 3.36e-01 77.0% 73.8%
3409964 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 38.0 2.45e-01 82.0% 42.2%
3692645 109.4.1.907 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › M-HEAT_ATR 0.50 46.0 3.19e-01 100.0% 32.4%