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NC_019407.1__YP_006988711.1__CcrMagneto_gp029__00029
Bact-VirNC_019407.1__YP_006988711.1__CcrMagneto_gp029__00029
Identity
- Accession:
- NC_019407 ↗
- Kingdom:
- phage
Quality
76.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Jeanschmidtviridae›
Shapirovirus›
Caulobacter_virus_Magneto
TaxID: 1211642
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-88
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3uh8A00 | 2.60.40.3350 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 39.0 | 3.51e-01 | 91.6% | 51.7% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.55 | 32.0 | 3.50e-01 | 96.4% | 73.8% |
| 4f4oC03 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 35.0 | 3.42e-01 | 84.3% | 62.9% |
| 5o5iA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 32.0 | 3.14e-01 | 96.4% | 57.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3352699 | 375.1.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rubredoxin | 0.70 | 41.0 | 5.15e-01 | 77.1% | 98.0% |
| 5052569 | 375.1.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rubredoxin | 0.69 | 39.0 | 4.89e-01 | 88.0% | 94.0% |
| 5065792 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.64 | 40.0 | 3.24e-01 | 79.5% | 33.5% |
| 4946175 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.63 | 41.0 | 4.34e-01 | 80.7% | 74.7% |
| 3663415 | 375.1.1.64 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX | 0.62 | 42.0 | 4.82e-01 | 100.0% | 96.7% |
| 4370424 | 243.3.1.52 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 | 0.59 | 34.0 | 3.03e-01 | 92.8% | 37.6% |
| 3582834 | 4.1.1.319 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 | 0.59 | 34.0 | 3.34e-01 | 92.8% | 49.5% |
| 3999188 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.56 | 29.0 | 3.54e-01 | 73.5% | 80.0% |
| 4158495 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.52 | 42.0 | 4.13e-01 | 89.2% | 88.9% |
| 3804385 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 29.0 | 3.19e-01 | 92.8% | 71.7% |
| 4962274 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 28.0 | 3.40e-01 | 92.8% | 95.6% |
| 3519308 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 30.0 | 3.39e-01 | 92.8% | 80.0% |
| 3647546 | 4.26.1.0 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 | 0.50 | 30.0 | 3.49e-01 | 92.8% | 89.1% |