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NC_019408.1__YP_006989039.1__D869_gp010__00010

Bact-Vir

NC_019408.1__YP_006989039.1__D869_gp010__00010

Identity

Accession:
NC_019408 ↗
Kingdom:
phage

Quality

68.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 144-246
PDB
D2 medium residues 16-139
PDB
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.56 25.0 3.30e-01 90.3% 75.4%
4ifaA01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.56 41.0 3.18e-01 77.4% 88.9%
1e2rA02 2.140.10.20 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 0.54 42.0 2.98e-01 85.5% 49.8%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.51 44.0 4.45e-01 100.0% 91.3%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030652 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.81 43.0 4.00e-01 94.4% 43.3%
3711004 77.3.1.1 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › Tcp10_C 0.73 42.0 4.22e-01 100.0% 56.0%
3739946 5.1.4.265 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR3_1st 0.54 41.0 2.96e-01 79.8% 64.2%
3559756 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 42.0 3.15e-01 83.1% 56.7%
3474473 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.54 41.0 3.55e-01 100.0% 52.4%
4965319 241.11.1.3 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › Luciferase 0.54 33.0 3.28e-01 83.1% 56.3%
3929900 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 42.0 2.83e-01 84.7% 70.1%
3721652 5.1.5.126 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_VPS8 0.52 42.0 2.90e-01 86.3% 36.5%
4024970 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 41.0 2.86e-01 86.3% 41.2%
3632998 5.1.4.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.50 40.0 2.86e-01 86.3% 42.7%