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NC_019408.1__YP_006989086.1__D869_gp057__00057
Bact-VirNC_019408.1__YP_006989086.1__D869_gp057__00057
Identity
- Accession:
- NC_019408 ↗
- Kingdom:
- phage
Quality
65.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Jeanschmidtviridae›
Poindextervirus›
Caulobacter_phage_CcrRogue
TaxID: 2927986
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 62-113
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ruyA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.63 | 41.0 | 3.03e-01 | 96.2% | 24.5% |
| 2codA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 42.0 | 3.47e-01 | 71.2% | 44.8% |
| 3c6fA01 | 3.30.240.20 | Alpha Beta › 2-Layer Sandwich › CRO Repressor › bsu07140 like domains | 0.58 | 44.0 | 4.24e-01 | 100.0% | 74.2% |
| 4a2lF02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 47.0 | 2.94e-01 | 96.2% | 39.2% |
| 3c6fA02 | 3.30.240.20 | Alpha Beta › 2-Layer Sandwich › CRO Repressor › bsu07140 like domains | 0.55 | 46.0 | 4.34e-01 | 96.2% | 95.2% |
| 1b3qB03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 36.0 | 3.33e-01 | 92.3% | 51.5% |
| 2vh2A02 | 3.40.50.11690 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cell division protein FtsQ/DivIB | 0.54 | 46.0 | 3.51e-01 | 100.0% | 55.0% |
| 2grvA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.54 | 44.0 | 3.47e-01 | 94.2% | 42.5% |
| 2v1yA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 41.0 | 3.56e-01 | 88.5% | 71.9% |
| 3fbyA01 | 2.10.25.10 | Mainly Beta › Ribbon › Laminin › Laminin | 0.53 | 37.0 | 3.89e-01 | 94.2% | 85.1% |
| 3gdzB00 | 3.30.1360.70 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Arginyl tRNA synthetase N-terminal domain | 0.53 | 44.0 | 3.56e-01 | 100.0% | 47.7% |
| 5upiA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.52 | 41.0 | 2.97e-01 | 96.2% | 47.3% |
| 2bddA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.52 | 41.0 | 3.25e-01 | 94.2% | 47.2% |
| 5jldA01 | 3.30.1360.70 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Arginyl tRNA synthetase N-terminal domain | 0.52 | 41.0 | 3.36e-01 | 98.1% | 43.9% |
| 5zspA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 39.0 | 2.98e-01 | 82.7% | 77.5% |
| 6ketA01 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.51 | 38.0 | 2.38e-01 | 84.6% | 14.2% |
| 2f4qA01 | 3.30.66.10 | Alpha Beta › 2-Layer Sandwich › Viral Topoisomerase I › DNA topoisomerase I domain | 0.51 | 43.0 | 3.79e-01 | 90.4% | 95.8% |
| 1uwdA00 | 3.30.300.130 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) | 0.51 | 42.0 | 3.49e-01 | 100.0% | 83.3% |
| 2wnhA00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.50 | 40.0 | 2.49e-01 | 98.1% | 20.1% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5064344 | 7584.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding | 0.77 | 50.0 | 3.49e-01 | 84.6% | 22.6% |
| 4112791 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.69 | 46.0 | 4.67e-01 | 71.2% | 70.0% |
| 4065466 | 220.1.1.150 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 | 0.69 | 45.0 | 3.92e-01 | 71.2% | 43.8% |
| 4278911 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.68 | 44.0 | 4.55e-01 | 71.2% | 70.0% |
| 2754408 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.68 | 50.0 | 3.80e-01 | 86.5% | 34.5% |
| 3269336 | 310.1.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain | 0.64 | 52.0 | 4.03e-01 | 100.0% | 40.0% |
| 3989044 | 101.36.1.1 ↗ | alpha arrays › HTH › YetF C-terminal domain › YetF C-terminal domain › DUF421 | 0.63 | 45.0 | 4.49e-01 | 94.2% | 74.5% |
| 4962054 | 375.1.1.345 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7837 | 0.62 | 44.0 | 4.63e-01 | 73.1% | 84.4% |
| 4962276 | 4.26.1.10 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › DUF7837 | 0.61 | 43.0 | 4.51e-01 | 73.1% | 88.9% |
| 3661880 | 390.1.1.6 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_2 | 0.61 | 40.0 | 3.84e-01 | 92.3% | 53.8% |
| 4482101 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.61 | 42.0 | 3.12e-01 | 88.5% | 28.1% |
| 3276527 | 109.4.1.526 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Atx10homo_assoc | 0.60 | 38.0 | 2.43e-01 | 96.2% | 12.7% |
| 4940846 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.60 | 42.0 | 4.11e-01 | 71.2% | 66.1% |
| 185097 | 101.36.1.1 ↗ | alpha arrays › HTH › YetF C-terminal domain › YetF C-terminal domain › DUF421 | 0.58 | 44.0 | 4.15e-01 | 100.0% | 69.7% |
| 4160416 | 101.36.1.1 ↗ | alpha arrays › HTH › YetF C-terminal domain › YetF C-terminal domain › DUF421 | 0.57 | 45.0 | 4.31e-01 | 88.5% | 96.7% |
| 5081050 | 4275.1.1.11 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › SU10_adaptor | 0.56 | 38.0 | 2.59e-01 | 71.2% | 35.5% |
| 3595319 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 46.0 | 3.71e-01 | 98.1% | 92.2% |
| 4051084 | 101.36.1.1 ↗ | alpha arrays › HTH › YetF C-terminal domain › YetF C-terminal domain › DUF421 | 0.55 | 44.0 | 4.29e-01 | 94.2% | 100.0% |
| 4886902 | 4167.1.1.1 ↗ | beta complex topology › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › LlgE_F_G_D1 | 0.55 | 45.0 | 3.92e-01 | 94.2% | 98.8% |
| 3961341 | 304.136.1.0 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain | 0.54 | 43.0 | 3.48e-01 | 94.2% | 43.6% |
| 3599123 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 38.0 | 2.32e-01 | 76.9% | 20.7% |
| 3742835 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.52 | 42.0 | 2.64e-01 | 98.1% | 33.4% |
| 3697894 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.51 | 41.0 | 2.44e-01 | 98.1% | 30.0% |