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NC_019408.1__YP_006989210.1__D869_gp251__00181

Bact-Vir

NC_019408.1__YP_006989210.1__D869_gp251__00181

Identity

Accession:
NC_019408 ↗
Kingdom:
phage

Quality

81.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Poindextervirus› Caulobacter_phage_CcrRogue

TaxID: 2927986

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-80
PDB
Domain cluster: rep: CG_2015-01t_scaffold_8_prodigal-single.1__X__X__00165__D13-60
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 5.26e-01 95.2% 89.7%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.65 45.0 3.60e-01 72.6% 85.2%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 50.0 3.87e-01 88.7% 63.8%
3e4wA02 2.40.180.10 Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain 0.63 53.0 3.77e-01 100.0% 66.2%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 50.0 4.08e-01 90.3% 73.1%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.51e-01 100.0% 75.8%
2konA00 3.30.160.350 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 45.0 4.20e-01 85.5% 92.7%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 50.0 3.26e-01 100.0% 69.5%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.58 43.0 3.65e-01 100.0% 45.5%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 3.61e-01 88.7% 79.9%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 43.0 3.94e-01 100.0% 59.8%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 48.0 4.27e-01 100.0% 65.2%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.56 44.0 3.70e-01 100.0% 49.5%
2greF02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.56 42.0 3.95e-01 100.0% 66.7%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 4.45e-01 98.4% 93.1%
2icuA00 3.90.1680.10 Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › SOS response associated peptidase-like 0.55 47.0 3.26e-01 96.8% 75.2%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 38.0 3.68e-01 75.8% 90.4%
2odpA03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 45.0 3.45e-01 100.0% 47.9%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 3.48e-01 71.0% 84.6%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.53 45.0 3.56e-01 98.4% 74.6%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.53 41.0 3.33e-01 90.3% 75.0%
1vf7F01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.53 44.0 3.87e-01 100.0% 68.6%
2fr5A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 39.0 2.98e-01 80.6% 36.8%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 2.94e-01 77.4% 41.7%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.52e-01 96.8% 76.9%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.51 42.0 3.85e-01 100.0% 70.2%
1cttA02 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 38.0 3.10e-01 80.6% 45.2%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4999741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 51.0 4.77e-01 100.0% 67.5%
2557227 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.66 52.0 4.88e-01 100.0% 70.1%
4957228 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.65 48.0 3.83e-01 80.6% 43.1%
3410370 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.48e-01 80.6% 90.0%
3725026 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.61 45.0 3.84e-01 80.6% 74.3%
1716898 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.59 45.0 3.45e-01 85.5% 42.6%
3588750 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.59 45.0 4.27e-01 85.5% 90.7%
3472797 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.58 44.0 3.46e-01 83.9% 86.4%
3387846 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.58 44.0 3.63e-01 85.5% 45.0%
4026425 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.57 44.0 3.45e-01 87.1% 38.6%
3988064 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 40.0 3.86e-01 74.2% 82.9%
3526900 269.1.1.0 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like 0.57 43.0 2.62e-01 80.6% 29.8%
3585538 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.57 48.0 4.17e-01 100.0% 60.0%
648 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.57 48.0 4.34e-01 100.0% 68.2%
3775836 220.1.1.56 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.56 48.0 4.06e-01 100.0% 75.5%
3741279 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 40.0 3.19e-01 79.0% 84.3%
3606821 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.55 47.0 3.83e-01 100.0% 65.6%
4929262 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.55 47.0 3.56e-01 100.0% 39.4%
3861569 220.1.1.56 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.55 47.0 3.93e-01 100.0% 73.9%
3821607 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.55 47.0 2.96e-01 98.4% 77.7%
3409707 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.54 43.0 3.52e-01 90.3% 74.8%
1146571 5092.1.1.8 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › TAdV_Fibre-like_head 0.53 45.0 3.56e-01 98.4% 74.6%
3995759 4.1.1.284 ↗ beta barrels › SH3 › SH3 › SH3 › SBNO 0.53 44.0 3.68e-01 100.0% 58.3%
3774692 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.53 42.0 4.00e-01 100.0% 75.0%
3854230 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.53 37.0 2.40e-01 77.4% 35.0%
3187634 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.52 43.0 2.59e-01 98.4% 29.1%
5052861 211.1.1.7 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_4 0.52 39.0 3.14e-01 85.5% 75.7%
3592422 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.52 42.0 2.62e-01 91.9% 68.4%
4935307 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 38.0 3.49e-01 79.0% 63.7%
4864011 1.1.7.41 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.51 42.0 3.66e-01 100.0% 57.1%
3700334 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 43.0 3.15e-01 95.2% 93.1%
3988067 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 37.0 3.37e-01 79.0% 67.1%
5030911 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.50 38.0 3.50e-01 83.9% 85.5%
D2 high residues 97-167
PDB
Domain cluster: rep: RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00065__D3-83_93-101