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NC_019408.1__YP_006989259.1__D869_gp202__00230
Bact-VirNC_019408.1__YP_006989259.1__D869_gp202__00230
Identity
- Accession:
- NC_019408 ↗
- Kingdom:
- phage
Quality
81.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Jeanschmidtviridae›
Poindextervirus›
Caulobacter_phage_CcrRogue
TaxID: 2927986
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-96
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qr4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.76 | 47.0 | 4.88e-01 | 80.0% | 67.8% |
| 5mj6A03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.67 | 37.0 | 3.98e-01 | 91.6% | 62.5% |
| 8adnN01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.66 | 49.0 | 3.90e-01 | 77.9% | 95.3% |
| 6rptC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 48.0 | 4.53e-01 | 77.9% | 64.3% |
| 4qamB00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.63 | 55.0 | 4.46e-01 | 95.8% | 63.9% |
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.63 | 50.0 | 4.74e-01 | 88.4% | 80.7% |
| 4b7lA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 39.0 | 3.87e-01 | 81.1% | 60.0% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.62 | 50.0 | 4.84e-01 | 89.5% | 80.7% |
| 2fg9A01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.61 | 54.0 | 4.58e-01 | 97.9% | 78.6% |
| 2mraA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.61 | 45.0 | 4.22e-01 | 78.9% | 92.3% |
| 4jzjC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 43.0 | 4.21e-01 | 86.3% | 68.3% |
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.60 | 44.0 | 4.44e-01 | 77.9% | 81.2% |
| 2fhqA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 54.0 | 4.77e-01 | 100.0% | 85.2% |
| 8evkA01 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.59 | 42.0 | 4.06e-01 | 73.7% | 75.9% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.59 | 49.0 | 4.60e-01 | 97.9% | 73.3% |
| 1jx4A04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.59 | 47.0 | 4.74e-01 | 91.6% | 85.7% |
| 3in6A02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 53.0 | 4.95e-01 | 100.0% | 97.4% |
| 3rj2X00 | 2.60.120.1150 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 43.0 | 3.94e-01 | 97.9% | 56.4% |
| 2f1eA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.59 | 42.0 | 3.99e-01 | 75.8% | 62.9% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.59 | 47.0 | 4.50e-01 | 87.4% | 76.6% |
| 6oauA02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.59 | 52.0 | 4.79e-01 | 97.9% | 99.2% |
| 1d5rA02 | 2.60.40.1110 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 51.0 | 4.58e-01 | 97.9% | 69.9% |
| 3b8fB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.58 | 50.0 | 4.37e-01 | 100.0% | 63.4% |
| 5hdwA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.58 | 42.0 | 3.87e-01 | 78.9% | 61.1% |
| 6z9cA01 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.57 | 42.0 | 3.92e-01 | 81.1% | 61.5% |
| 2imlA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 50.0 | 4.74e-01 | 97.9% | 85.0% |
| 3a32A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.56 | 48.0 | 3.35e-01 | 95.8% | 80.9% |
| 2hlcA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 44.0 | 4.37e-01 | 94.7% | 80.8% |
| 2lw3A00 | 2.60.40.2880 | Mainly Beta › Sandwich › Immunoglobulin-like › MmpS1-5, C-terminal soluble domain | 0.55 | 41.0 | 4.21e-01 | 100.0% | 83.3% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.55 | 40.0 | 4.33e-01 | 97.9% | 94.7% |
| 4bpuC00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.54 | 44.0 | 3.01e-01 | 90.5% | 65.7% |
| 2bkfA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 38.0 | 4.06e-01 | 96.8% | 86.7% |
| 2fnqA01 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.54 | 43.0 | 4.15e-01 | 96.8% | 76.1% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.52 | 41.0 | 4.22e-01 | 97.9% | 90.2% |
| 3da8B00 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.52 | 45.0 | 3.53e-01 | 100.0% | 44.4% |
| 1wmhB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 37.0 | 3.91e-01 | 96.8% | 86.6% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.51 | 40.0 | 4.04e-01 | 98.9% | 87.2% |
| 7ylrA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.50 | 38.0 | 3.77e-01 | 83.2% | 78.1% |
| 6muwJ00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.50 | 44.0 | 3.50e-01 | 100.0% | 55.6% |
| 3weeA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 41.0 | 3.39e-01 | 92.6% | 96.7% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3709350 | 304.31.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase | 0.82 | 60.0 | 4.71e-01 | 74.7% | 97.2% |
| 3715301 | 304.55.2.0 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like | 0.81 | 59.0 | 5.11e-01 | 75.8% | 97.1% |
| 2028252 | 3986.2.1.1 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd › Dmd | 0.77 | 47.0 | 5.56e-01 | 75.8% | 90.6% |
| 3272881 | 11.2.1.12 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DOCK-C2 | 0.66 | 56.0 | 4.59e-01 | 92.6% | 71.2% |
| 4978206 | 230.1.1.3 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS | 0.65 | 46.0 | 3.94e-01 | 73.7% | 81.7% |
| 3641871 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.65 | 47.0 | 3.95e-01 | 85.3% | 45.0% |
| 5051722 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 44.0 | 4.39e-01 | 80.0% | 68.0% |
| 3285401 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.64 | 47.0 | 5.11e-01 | 91.6% | 97.3% |
| 4031235 | 3986.2.1.2 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd › DUF2922 | 0.63 | 44.0 | 4.97e-01 | 92.6% | 97.1% |
| 2323784 | 11.2.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › RPGR1_C | 0.63 | 55.0 | 4.46e-01 | 95.8% | 63.9% |
| 4982153 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.62 | 55.0 | 4.03e-01 | 100.0% | 44.1% |
| 4078508 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.62 | 50.0 | 4.73e-01 | 88.4% | 75.7% |
| 3743280 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.61 | 50.0 | 4.71e-01 | 89.5% | 76.5% |
| 4281749 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.61 | 49.0 | 4.63e-01 | 90.5% | 73.3% |
| 3955717 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.60 | 49.0 | 4.57e-01 | 91.6% | 74.4% |
| 3289401 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.60 | 50.0 | 4.53e-01 | 100.0% | 66.9% |
| 4939155 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.59 | 48.0 | 4.50e-01 | 89.5% | 73.9% |
| 5078886 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.59 | 41.0 | 3.90e-01 | 95.8% | 60.9% |
| 4971085 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 37.0 | 3.73e-01 | 80.0% | 62.1% |
| 3519916 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.59 | 48.0 | 4.81e-01 | 89.5% | 91.6% |
| 4609141 | 11.2.1.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 | 0.59 | 51.0 | 4.54e-01 | 97.9% | 70.7% |
| 4126373 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.58 | 48.0 | 4.89e-01 | 91.6% | 97.8% |
| 3606610 | 11.1.1.720 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IG_AIR9 | 0.58 | 40.0 | 4.00e-01 | 82.1% | 68.0% |
| 332272 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.58 | 50.0 | 4.37e-01 | 100.0% | 63.4% |
| 3499411 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.58 | 50.0 | 3.20e-01 | 98.9% | 24.4% |
| 3972650 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 41.0 | 3.93e-01 | 73.7% | 100.0% |
| 4029036 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.57 | 47.0 | 4.83e-01 | 90.5% | 96.7% |
| 3552986 | 11.1.1.275 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL3Ra_N | 0.57 | 34.0 | 3.56e-01 | 72.6% | 63.5% |
| 3265120 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.57 | 50.0 | 4.17e-01 | 100.0% | 98.3% |
| 3972526 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 38.0 | 4.30e-01 | 93.7% | 95.7% |
| 3172638 | 223.2.1.29 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 | 0.56 | 48.0 | 3.95e-01 | 98.9% | 74.6% |
| 3778873 | 206.1.3.46 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_IQCH | 0.56 | 49.0 | 3.63e-01 | 100.0% | 37.7% |
| 3579804 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 34.0 | 3.35e-01 | 74.7% | 58.0% |
| 3518442 | 10.10.1.1 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT | 0.54 | 48.0 | 4.34e-01 | 100.0% | 93.1% |
| 3262571 | 60.1.2.6 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Beta-barrel_INTS6 | 0.53 | 47.0 | 3.37e-01 | 100.0% | 57.3% |
| 409204 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.53 | 28.0 | 2.82e-01 | 96.8% | 46.6% |
| 4157290 | 206.1.3.19 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C | 0.52 | 41.0 | 2.99e-01 | 83.2% | 40.4% |
| 5053865 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.52 | 43.0 | 4.45e-01 | 97.9% | 95.6% |
| 168173 | 4276.1.1.1 ↗ | a+b two layers › XisI-like › XisI-like › XisI-like › XisI | 0.51 | 30.0 | 2.95e-01 | 74.7% | 49.5% |
| 3904649 | 12.5.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS | 0.51 | 44.0 | 3.62e-01 | 96.8% | 77.2% |
| 3277197 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.51 | 34.0 | 3.45e-01 | 91.6% | 68.4% |
| 3858171 | 6129.1.1.0 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family | 0.50 | 37.0 | 2.78e-01 | 77.9% | 38.4% |
| 3272081 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 43.0 | 3.62e-01 | 97.9% | 62.4% |