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NC_019408.1__YP_006989269.1__D869_gp192__00240
Bact-VirNC_019408.1__YP_006989269.1__D869_gp192__00240
Identity
- Accession:
- NC_019408 ↗
- Kingdom:
- phage
Quality
73.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Jeanschmidtviridae›
Poindextervirus›
Caulobacter_phage_CcrRogue
TaxID: 2927986
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-75
Domain cluster:
rep: ON529853.1__UTC29378.1__BAMBUS_02960__00295__D2-74
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bq6F00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.71 | 50.0 | 3.84e-01 | 100.0% | 34.2% |
| 3dlaB01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.70 | 62.0 | 3.97e-01 | 98.6% | 67.7% |
| 2cocA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.68 | 37.0 | 3.24e-01 | 88.4% | 37.0% |
| 3mxqC00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.68 | 49.0 | 4.00e-01 | 76.8% | 48.8% |
| 2e11A00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.66 | 58.0 | 3.91e-01 | 98.6% | 73.2% |
| 6hmjA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.65 | 48.0 | 4.15e-01 | 78.3% | 53.3% |
| 3l2pA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.65 | 45.0 | 4.52e-01 | 84.1% | 71.8% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.62 | 54.0 | 4.25e-01 | 100.0% | 79.6% |
| 3c1yA01 | 3.40.1700.10 | Alpha Beta › 3-Layer(aba) Sandwich › YojJ-like (1 › DNA integrity scanning protein, DisA, N-terminal domain | 0.61 | 43.0 | 3.48e-01 | 75.4% | 87.7% |
| 5vawA01 | 3.30.700.10 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin | 0.61 | 44.0 | 3.78e-01 | 78.3% | 94.0% |
| 2e1qC05 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.61 | 43.0 | 3.57e-01 | 100.0% | 43.2% |
| 1ad2A01 | 3.30.190.20 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribosomal protein L1/L10, rRNA-binding domain | 0.60 | 51.0 | 4.29e-01 | 95.7% | 77.7% |
| 3g7kA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.60 | 52.0 | 3.86e-01 | 100.0% | 63.5% |
| 1s68A02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.60 | 53.0 | 4.53e-01 | 100.0% | 84.1% |
| 2gkpA00 | 3.40.1590.10 | Alpha Beta › 3-Layer(aba) Sandwich › NMB0488-like fold › NMB0488-like | 0.60 | 52.0 | 3.99e-01 | 100.0% | 77.9% |
| 6iouA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 44.0 | 3.83e-01 | 89.9% | 50.0% |
| 1yrtA01 | 3.30.70.1720 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 43.0 | 3.34e-01 | 76.8% | 73.2% |
| 2ky8A00 | 3.30.890.10 | Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A | 0.59 | 37.0 | 3.76e-01 | 98.6% | 62.9% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.58 | 50.0 | 4.61e-01 | 100.0% | 89.4% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.58 | 40.0 | 4.38e-01 | 100.0% | 89.3% |
| 3vpbB03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 44.0 | 3.79e-01 | 87.0% | 70.5% |
| 1t3yA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.55 | 48.0 | 3.97e-01 | 100.0% | 80.2% |
| 2ciuA00 | 3.10.450.320 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 | 0.54 | 46.0 | 3.93e-01 | 100.0% | 91.9% |
| 3qocA00 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.54 | 39.0 | 3.25e-01 | 78.3% | 55.8% |
| 3cymA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 38.0 | 2.67e-01 | 73.9% | 30.4% |
| 6qj2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 45.0 | 2.92e-01 | 98.6% | 33.1% |
| 3vwdA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 47.0 | 3.38e-01 | 100.0% | 56.6% |
| 1q57G01 | 2.20.25.180 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.52 | 45.0 | 4.43e-01 | 94.2% | 87.7% |
| 1k32A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 44.0 | 2.89e-01 | 98.6% | 38.3% |
| 2dfkC02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 42.0 | 3.39e-01 | 89.9% | 62.4% |
| 2yeqA02 | 3.60.21.70 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Alkaline phosphatase D (PhoD) | 0.52 | 42.0 | 2.61e-01 | 88.4% | 27.1% |
| 1szzA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.52 | 45.0 | 3.35e-01 | 95.7% | 48.0% |
| 1idpA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 41.0 | 3.26e-01 | 88.4% | 90.5% |
| 4kg8A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 39.0 | 3.25e-01 | 84.1% | 63.6% |
| 1ospO01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.51 | 42.0 | 3.69e-01 | 98.6% | 60.0% |
| 6vddD01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 40.0 | 3.04e-01 | 88.4% | 62.1% |
| 3ua3A03 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.51 | 42.0 | 3.15e-01 | 100.0% | 97.5% |
| 7jptA06 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.50 | 43.0 | 3.69e-01 | 98.6% | 83.6% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4567141 | 6129.1.1.0 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family | 0.73 | 48.0 | 3.17e-01 | 100.0% | 16.8% |
| 3889236 | 6129.1.1.9 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › RGM_C | 0.71 | 50.0 | 3.90e-01 | 100.0% | 35.2% |
| 3564590 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.70 | 52.0 | 3.04e-01 | 79.7% | 11.0% |
| 3419015 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.69 | 42.0 | 4.86e-01 | 89.9% | 86.0% |
| 3565087 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.68 | 47.0 | 3.43e-01 | 100.0% | 27.0% |
| 3234953 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.66 | 48.0 | 3.37e-01 | 100.0% | 24.7% |
| 3515806 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.64 | 46.0 | 3.65e-01 | 75.4% | 38.5% |
| 4086930 | 3922.1.1.276 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › SMC_N, AAA_21 | 0.63 | 55.0 | 3.34e-01 | 100.0% | 22.9% |
| 3969384 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.63 | 55.0 | 4.27e-01 | 100.0% | 85.6% |
| 3569488 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.63 | 55.0 | 4.41e-01 | 100.0% | 62.9% |
| 3447934 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.63 | 43.0 | 3.84e-01 | 73.9% | 50.0% |
| 3304137 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 56.0 | 4.95e-01 | 100.0% | 73.0% |
| 3248509 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.62 | 54.0 | 4.75e-01 | 100.0% | 77.1% |
| 4260209 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.62 | 54.0 | 3.22e-01 | 100.0% | 19.8% |
| 5079566 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.62 | 53.0 | 3.24e-01 | 100.0% | 22.4% |
| 3216243 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.59 | 51.0 | 4.20e-01 | 100.0% | 72.6% |
| 3628575 | 210.1.2.8 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 | 0.59 | 50.0 | 3.42e-01 | 100.0% | 30.9% |
| 5045714 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.59 | 48.0 | 3.55e-01 | 89.9% | 62.8% |
| 4941788 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.59 | 50.0 | 3.31e-01 | 100.0% | 34.8% |
| 5070582 | 815.1.1.0 ↗ | a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 | 0.58 | 51.0 | 4.80e-01 | 100.0% | 98.8% |
| 3319663 | 10.10.1.1 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT | 0.55 | 47.0 | 3.81e-01 | 100.0% | 94.5% |
| 5021926 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.54 | 46.0 | 3.43e-01 | 97.1% | 60.0% |
| 5052130 | 2004.1.1.293 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 | 0.53 | 45.0 | 2.88e-01 | 100.0% | 30.5% |
| 5038844 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.53 | 35.0 | 3.37e-01 | 76.8% | 58.7% |
| 5034671 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 47.0 | 3.58e-01 | 100.0% | 54.4% |
| 4011362 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.52 | 44.0 | 2.90e-01 | 97.1% | 50.2% |
| 3544903 | 5.1.4.13 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP | 0.52 | 45.0 | 2.83e-01 | 98.6% | 33.7% |
| 3604672 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.52 | 37.0 | 3.37e-01 | 75.4% | 97.9% |
| 4262243 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.51 | 40.0 | 2.48e-01 | 88.4% | 77.7% |
| 3874473 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.50 | 41.0 | 3.15e-01 | 100.0% | 84.0% |