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NC_019408.1__YP_006989287.1__D869_gp174__00258

Bact-Vir

NC_019408.1__YP_006989287.1__D869_gp174__00258

Identity

Accession:
NC_019408 ↗
Kingdom:
phage

Quality

62.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-96
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 65.0 5.64e-01 100.0% 74.8%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 65.0 5.57e-01 100.0% 72.6%
3nqoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 65.0 4.72e-01 100.0% 40.7%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 65.0 5.14e-01 100.0% 53.0%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 63.0 4.94e-01 100.0% 55.2%
3lfkD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 62.0 5.22e-01 100.0% 60.0%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 64.0 5.69e-01 100.0% 80.2%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 64.0 5.82e-01 100.0% 89.9%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 64.0 4.87e-01 100.0% 46.4%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 64.0 5.00e-01 100.0% 51.5%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 63.0 5.47e-01 100.0% 73.8%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 63.0 5.43e-01 100.0% 69.5%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 63.0 5.49e-01 100.0% 70.0%
1jgsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 64.0 4.97e-01 100.0% 50.7%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 63.0 5.07e-01 100.0% 55.6%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 62.0 5.23e-01 100.0% 64.3%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 63.0 4.92e-01 100.0% 51.1%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 63.0 4.64e-01 100.0% 41.7%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 62.0 4.85e-01 100.0% 57.0%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 62.0 4.70e-01 100.0% 52.9%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 62.0 5.30e-01 100.0% 72.4%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 61.0 5.16e-01 100.0% 66.1%
5dcaA11 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 61.0 5.24e-01 100.0% 91.4%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 60.0 5.02e-01 100.0% 69.6%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 58.0 4.67e-01 100.0% 54.5%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 54.0 4.87e-01 89.9% 73.6%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 54.0 5.06e-01 89.9% 80.5%
3qphA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 4.64e-01 97.1% 62.9%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 52.0 5.37e-01 88.4% 98.4%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 56.0 5.26e-01 100.0% 92.9%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 53.0 5.16e-01 94.2% 88.5%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 51.0 5.21e-01 89.9% 98.5%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.62 50.0 5.04e-01 88.4% 95.7%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.75e-01 88.4% 76.9%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 55.0 4.49e-01 100.0% 82.7%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 5.32e-01 88.4% 96.8%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.79e-01 94.2% 77.5%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 53.0 4.40e-01 100.0% 59.8%
3h35A00 3.30.110.190 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.61 54.0 4.27e-01 100.0% 81.9%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 5.17e-01 88.4% 100.0%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.62e-01 89.9% 83.9%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 4.55e-01 100.0% 81.4%
5jbrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 4.77e-01 97.1% 86.0%
4cgyA01 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 34.0 2.66e-01 87.0% 26.1%
1uhwA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.58e-01 89.9% 89.0%
6vt2A03 2.60.40.4140 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 41.0 3.53e-01 94.2% 63.3%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.50 38.0 3.12e-01 89.9% 54.1%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5076338 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.73 67.0 4.82e-01 100.0% 47.0%
4025377 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 59.0 5.55e-01 89.9% 94.1%
5038599 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.72 67.0 5.39e-01 100.0% 61.6%
4201034 101.1.2.41 alpha arrays › HTH › HTH › winged helix domain › FokI_dom_2 0.69 62.0 4.81e-01 100.0% 81.3%
3712062 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 56.0 4.71e-01 89.9% 89.6%
4388950 101.1.2.100 alpha arrays › HTH › HTH › winged helix domain › FeoC 0.68 57.0 5.38e-01 89.9% 98.8%
3926829 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 61.0 3.91e-01 100.0% 26.8%
4953881 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.67 60.0 5.17e-01 100.0% 79.1%
3642594 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.67 59.0 3.64e-01 100.0% 26.5%
4627913 101.1.2.90 alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.67 59.0 5.33e-01 97.1% 82.1%
4055578 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 59.0 4.72e-01 100.0% 86.4%
4937616 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 51.0 5.46e-01 97.1% 95.0%
3480146 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.67 62.0 5.19e-01 100.0% 88.2%
5071468 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 59.0 4.86e-01 100.0% 77.6%
3701445 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 4.44e-01 91.3% 65.9%
3991612 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 3.62e-01 89.9% 26.8%
3971434 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 54.0 4.70e-01 89.9% 72.4%
3601862 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 3.38e-01 95.7% 15.8%
5013924 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.63 57.0 5.21e-01 100.0% 91.1%
3853184 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.63 52.0 4.02e-01 91.3% 63.2%
4025929 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 57.0 4.79e-01 100.0% 80.9%
5018207 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.63 56.0 4.81e-01 100.0% 84.5%
3167817 101.1.2.251 alpha arrays › HTH › HTH › winged helix domain › DUF6581 0.62 53.0 3.90e-01 98.6% 40.5%
3386834 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 55.0 4.60e-01 100.0% 82.5%
5022194 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.61 55.0 5.02e-01 100.0% 87.8%
3316881 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 54.0 4.07e-01 100.0% 51.8%
3479163 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 55.0 4.43e-01 100.0% 71.5%
3685188 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.61 54.0 4.01e-01 100.0% 57.0%
3711775 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 4.73e-01 98.6% 92.2%
3991016 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 44.0 4.28e-01 76.8% 100.0%
4996686 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 52.0 4.62e-01 95.7% 92.0%
3342515 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 52.0 4.45e-01 100.0% 76.5%
3300362 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 51.0 3.91e-01 100.0% 51.2%
4016215 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 51.0 3.71e-01 100.0% 60.5%
3734563 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 40.0 2.55e-01 73.9% 68.6%
5051570 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 51.0 4.36e-01 100.0% 82.6%
4968278 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.58 50.0 4.76e-01 100.0% 98.8%
3250568 101.1.2.151 alpha arrays › HTH › HTH › winged helix domain › COR 0.57 49.0 4.47e-01 94.2% 88.9%
5064977 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 4.48e-01 89.9% 97.5%
3479087 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.57 48.0 3.15e-01 100.0% 67.0%
3559944 3914.1.1.2 alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer 0.55 43.0 2.52e-01 91.3% 60.7%
3866535 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 47.0 3.03e-01 100.0% 24.3%
3212212 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.53 38.0 2.50e-01 78.3% 34.1%
4545557 3343.1.1.2 alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.53 42.0 2.49e-01 89.9% 15.1%
3716161 246.3.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.52 43.0 2.97e-01 95.7% 100.0%
3473571 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.51 38.0 3.70e-01 87.0% 80.0%
3191376 389.1.1.109 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Vps3844_C 0.51 35.0 3.53e-01 72.5% 97.1%
3219989 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.51 41.0 2.71e-01 97.1% 81.4%
3689499 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 40.0 2.78e-01 92.8% 62.0%