←Back to structures
NC_019411.1__YP_006989790.1__D870_gp057__00057
Bact-VirNC_019411.1__YP_006989790.1__D870_gp057__00057
Identity
- Accession:
- NC_019411 ↗
- Kingdom:
- phage
Quality
80.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Jeanschmidtviridae›
Shapirovirus›
Caulobacter_phage_CcrSwift
TaxID: 2927984
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-63
Domain cluster:
rep: ON529853.1__UTC29567.1__BAMBUS_05090__00484__D7-62
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7dvrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 51.0 | 3.88e-01 | 100.0% | 68.1% |
| 4mo1A00 | 1.10.274.110 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › | 0.55 | 44.0 | 3.51e-01 | 100.0% | 44.8% |
| 2cttA01 | 2.10.230.10 | Mainly Beta › Ribbon › Chaperone, DNAj Protein; Chain A › Heat shock protein DnaJ, cysteine-rich domain | 0.55 | 38.0 | 3.63e-01 | 73.7% | 98.6% |
| 3caiA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 42.0 | 3.32e-01 | 98.2% | 71.2% |
| 1dmuA00 | 3.40.600.20 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › Restriction endonuclease BglI | 0.52 | 40.0 | 2.68e-01 | 94.7% | 68.9% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3238934 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.78 | 30.0 | 2.29e-01 | 100.0% | 16.7% |
| 3540352 | 361.1.1.0 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain | 0.73 | 53.0 | 4.82e-01 | 77.2% | 73.3% |
| 4388315 | 361.1.1.1 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG | 0.72 | 48.0 | 5.62e-01 | 70.2% | 97.5% |
| 3816323 | 361.1.1.0 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain | 0.72 | 48.0 | 4.78e-01 | 70.2% | 100.0% |
| 3814464 | 361.1.1.0 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain | 0.71 | 51.0 | 4.36e-01 | 75.4% | 97.8% |
| 4024146 | 361.1.1.1 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG | 0.71 | 51.0 | 5.48e-01 | 78.9% | 86.0% |
| 4945234 | 361.1.1.20 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_C | 0.71 | 50.0 | 4.78e-01 | 75.4% | 64.6% |
| 3352509 | 361.1.1.14 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › PF30758 | 0.71 | 52.0 | 4.68e-01 | 82.5% | 58.7% |
| 3652190 | 361.1.1.1 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG | 0.70 | 50.0 | 3.77e-01 | 75.4% | 33.6% |
| 4614871 | 361.1.1.1 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG | 0.70 | 48.0 | 5.59e-01 | 71.9% | 100.0% |
| 4885912 | 67.1.1.6 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_CXXCXGXG | 0.70 | 51.0 | 5.05e-01 | 80.7% | 73.3% |
| 3592669 | 361.1.1.0 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain | 0.69 | 49.0 | 4.60e-01 | 75.4% | 61.4% |
| 3820821 | 361.1.1.1 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG | 0.68 | 48.0 | 4.33e-01 | 75.4% | 56.0% |
| 3812451 | 361.1.1.1 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG | 0.68 | 49.0 | 5.40e-01 | 80.7% | 95.6% |
| 4259493 | 361.1.1.1 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG | 0.67 | 47.0 | 4.50e-01 | 75.4% | 64.6% |
| 3612252 | 361.1.1.1 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG | 0.67 | 48.0 | 4.47e-01 | 75.4% | 61.4% |
| 3245954 | 361.1.1.1 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG | 0.67 | 50.0 | 4.66e-01 | 80.7% | 64.3% |
| 4000324 | 361.1.1.1 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG | 0.67 | 48.0 | 4.37e-01 | 77.2% | 57.3% |
| 4976959 | 361.1.1.1 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG | 0.66 | 49.0 | 4.43e-01 | 80.7% | 58.7% |
| 4220475 | 361.1.1.1 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG | 0.66 | 48.0 | 4.38e-01 | 80.7% | 58.7% |
| 4466486 | 361.1.1.1 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG | 0.66 | 49.0 | 4.57e-01 | 78.9% | 68.6% |
| 3706455 | 361.1.1.1 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG | 0.66 | 49.0 | 3.87e-01 | 78.9% | 44.5% |
| 4592703 | 361.1.1.1 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG | 0.65 | 50.0 | 5.13e-01 | 86.0% | 83.6% |
| 3170179 | 361.1.1.1 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG | 0.65 | 48.0 | 4.18e-01 | 80.7% | 52.9% |
| 3207541 | 361.1.1.1 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG | 0.65 | 46.0 | 4.32e-01 | 75.4% | 61.4% |
| 3702888 | 361.1.1.1 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG | 0.64 | 52.0 | 4.69e-01 | 86.0% | 68.0% |
| 4162763 | 361.1.1.1 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG | 0.63 | 45.0 | 4.21e-01 | 78.9% | 61.4% |
| 3984490 | 361.1.1.2 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › Antiterm | 0.63 | 46.0 | 4.46e-01 | 78.9% | 98.5% |
| 3403576 | 375.1.1.316 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › GRXCR1-2_C | 0.62 | 43.0 | 4.68e-01 | 77.2% | 91.1% |
| 3598708 | 361.1.1.0 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain | 0.60 | 46.0 | 4.32e-01 | 80.7% | 74.3% |
| 4080896 | 67.1.1.4 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_CXXCXGXG, DnaJ_C | 0.60 | 48.0 | 3.43e-01 | 86.0% | 32.3% |
| 3177295 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.59 | 50.0 | 3.30e-01 | 100.0% | 50.4% |
| 3694428 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.51 | 38.0 | 2.38e-01 | 89.5% | 48.1% |
| 3507216 | 4.1.1.15 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L6e | 0.51 | 34.0 | 2.24e-01 | 71.9% | 16.0% |
| 4419361 | 601.7.1.40 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C | 0.51 | 40.0 | 2.69e-01 | 94.7% | 94.8% |
| 3856390 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.50 | 40.0 | 2.97e-01 | 98.2% | 47.0% |