←Back to structures

NC_019411.1__YP_006989862.1__D870_gp292__00129

Bact-Vir

NC_019411.1__YP_006989862.1__D870_gp292__00129

Identity

Accession:
NC_019411 ↗
Kingdom:
phage

Quality

87.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Shapirovirus› Caulobacter_phage_CcrSwift

TaxID: 2927984

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-91
PDB
Domain cluster: rep: MT661596.1__QMP24040.1__X__00046__D2-76
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.63 39.0 4.06e-01 80.9% 66.3%
6rupA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 44.0 4.10e-01 75.3% 93.7%
4gxbA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 52.0 4.95e-01 93.3% 96.2%
2o3oA01 2.40.128.690 Mainly Beta › Beta Barrel › Lipocalin › YycH protein, domain 3-like 0.55 42.0 3.83e-01 83.1% 78.5%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.61e-01 74.2% 96.4%
1na6A01 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.54 40.0 3.30e-01 79.8% 98.2%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.54 43.0 3.84e-01 85.4% 79.2%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.54 45.0 3.80e-01 96.6% 96.9%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.53 39.0 3.38e-01 76.4% 52.5%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 36.0 3.53e-01 70.8% 93.9%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 41.0 3.85e-01 84.3% 76.1%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 37.0 3.55e-01 76.4% 93.6%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 36.0 3.60e-01 70.8% 94.5%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.58e-01 85.4% 74.3%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.51 41.0 3.34e-01 86.5% 63.9%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.51 41.0 3.41e-01 89.9% 96.3%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.50 40.0 3.35e-01 89.9% 97.6%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3498103 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.67 54.0 3.44e-01 86.5% 90.2%
3966871 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.66 43.0 3.82e-01 79.8% 45.4%
3924081 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.64 45.0 3.93e-01 75.3% 75.7%
3600130 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.62 43.0 3.01e-01 74.2% 33.8%
4946540 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.61 47.0 3.43e-01 83.1% 38.8%
3301984 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 35.0 4.33e-01 82.0% 92.7%
4023469 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.60 34.0 2.95e-01 84.3% 35.0%
3709133 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 45.0 4.09e-01 79.8% 92.5%
5078629 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 49.0 4.64e-01 89.9% 96.3%
4514345 274.1.1.50 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › Spore_YunB 0.59 44.0 3.75e-01 78.7% 85.5%
4378772 2003.1.2.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.59 50.0 4.28e-01 94.4% 97.9%
4233828 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.58 42.0 4.15e-01 75.3% 83.2%
4955607 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.58 39.0 2.99e-01 70.8% 34.4%
3402269 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.56 40.0 3.75e-01 74.2% 70.9%
3691620 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.56 47.0 4.33e-01 95.5% 71.3%
4096366 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.56 40.0 3.54e-01 74.2% 85.6%
3389979 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 46.0 4.17e-01 95.5% 67.5%
3489971 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 47.0 4.27e-01 94.4% 91.7%
3802832 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.55 49.0 3.35e-01 100.0% 84.9%
3282536 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.55 38.0 4.01e-01 83.1% 81.2%
1553361 2.1.1.5 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17,Ribosomal_S17_N 0.55 42.0 4.31e-01 82.0% 96.5%
3883688 11.1.1.1025 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4556 0.53 39.0 3.64e-01 76.4% 93.6%
4990210 283.2.1.8 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 0.53 39.0 3.90e-01 78.7% 88.4%
4013325 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.53 44.0 4.02e-01 96.6% 67.2%
3596066 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 44.0 3.95e-01 91.0% 90.4%
3188394 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.52 44.0 4.04e-01 94.4% 73.3%
5020579 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 45.0 4.39e-01 94.4% 97.0%
3430247 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.52 39.0 3.77e-01 80.9% 79.8%
3817752 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 38.0 4.17e-01 82.0% 97.1%
3702318 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.52 39.0 2.98e-01 82.0% 73.0%
3458604 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.51 38.0 4.15e-01 83.1% 92.0%
4600806 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.51 40.0 3.73e-01 84.3% 74.5%
3224219 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 39.0 3.15e-01 80.9% 62.9%
3808162 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 36.0 3.65e-01 83.1% 74.4%
3860882 11.1.1.1025 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4556 0.50 36.0 3.43e-01 77.5% 92.7%