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NC_019411.1__YP_006989922.1__D870_gp232__00189

Bact-Vir

NC_019411.1__YP_006989922.1__D870_gp232__00189

Identity

Accession:
NC_019411 ↗
Kingdom:
phage

Quality

53.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Shapirovirus› Caulobacter_phage_CcrSwift

TaxID: 2927984

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-95
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.68 35.0 2.86e-01 90.2% 27.8%
2v9kA01 1.10.10.2050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 39.0 4.73e-01 90.2% 96.0%
3oz6B02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 50.0 3.63e-01 93.9% 84.5%
6whpA01 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.57 40.0 2.77e-01 72.0% 78.7%
1hn0A02 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.57 39.0 2.58e-01 72.0% 36.7%
3g0oA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.56 43.0 3.87e-01 85.4% 92.6%
2vx7A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 38.0 2.52e-01 70.7% 26.2%
2wtkC02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 46.0 3.54e-01 95.1% 84.2%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.54 43.0 3.19e-01 90.2% 59.7%
1l5aA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.52 39.0 3.05e-01 81.7% 69.6%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.82e-01 93.9% 86.1%
1t3aA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.51 38.0 2.49e-01 81.7% 48.8%
2wtvA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 43.0 3.50e-01 100.0% 88.8%
8dkrB01 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.50 35.0 2.64e-01 74.4% 100.0%
5u89A02 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.50 37.0 3.07e-01 81.7% 78.9%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4099242 109.2.1.28 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Lyase_catalyt 0.60 42.0 2.72e-01 72.0% 38.4%
3631586 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 35.0 3.96e-01 91.5% 78.3%
3485200 601.21.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › FAD-dependent thiol oxidase › FAD-dependent thiol oxidase › Evr1_Alr,FAD_SOX 0.58 49.0 3.52e-01 95.1% 57.7%
4806427 206.1.1.10 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.57 40.0 2.61e-01 72.0% 56.9%
3676416 320.4.1.3 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB 0.56 47.0 4.26e-01 98.8% 72.5%
3259873 3696.1.1.0 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.53 41.0 4.25e-01 90.2% 90.7%
3788382 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.52 39.0 3.96e-01 96.3% 82.5%
3788383 316.1.1.14 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD 0.52 38.0 2.46e-01 80.5% 97.3%
4976469 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.52 41.0 2.87e-01 87.8% 72.9%
4794393 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.51 31.0 3.39e-01 86.6% 76.2%
428210 3243.1.1.1 ↗ alpha complex topology › VopL dimerization domain › VopL dimerization domain › VopL dimerization domain › VCD 0.51 42.0 3.22e-01 97.6% 90.3%
3443929 101.1.2.67 ↗ alpha arrays › HTH › HTH › winged helix domain › HARE-HTH 0.51 32.0 2.72e-01 93.9% 36.4%
4947701 101.1.2.882 ↗ alpha arrays › HTH › HTH › winged helix domain › FeoA 0.50 38.0 3.56e-01 95.1% 66.0%
4264193 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.50 38.0 2.77e-01 82.9% 41.2%
D2 medium residues 99-170
PDB
D3 medium residues 171-260
PDB