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NC_019411.1__YP_006989934.1__D870_gp220__00201
Bact-VirNC_019411.1__YP_006989934.1__D870_gp220__00201
Identity
- Accession:
- NC_019411 ↗
- Kingdom:
- phage
Quality
91.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Jeanschmidtviridae›
Shapirovirus›
Caulobacter_phage_CcrSwift
TaxID: 2927984
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-53
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3iylB02 | 1.10.2050.10 | Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3 | 0.67 | 54.0 | 4.13e-01 | 92.5% | 38.1% |
| 2vk9A03 | 1.10.3730.30 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › | 0.65 | 52.0 | 4.38e-01 | 100.0% | 50.0% |
| 3l8kA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.64 | 57.0 | 3.78e-01 | 100.0% | 28.6% |
| 6vydA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.61 | 55.0 | 3.41e-01 | 100.0% | 25.5% |
| 1uf9A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 46.0 | 3.27e-01 | 100.0% | 35.1% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4382689 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.81 | 64.0 | 5.30e-01 | 84.9% | 66.7% |
| 3718113 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.67 | 51.0 | 4.50e-01 | 84.9% | 62.5% |
| 4975446 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.65 | 56.0 | 3.74e-01 | 100.0% | 25.0% |
| 4967072 | 5067.1.1.12 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › UPF0014 | 0.61 | 53.0 | 3.64e-01 | 100.0% | 42.7% |
D2
medium
residues 54-106
Domain cluster:
representative