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NC_019411.1__YP_006989957.1__D870_gp197__00224

Bact-Vir

NC_019411.1__YP_006989957.1__D870_gp197__00224

Identity

Accession:
NC_019411 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Shapirovirus› Caulobacter_phage_CcrSwift

TaxID: 2927984

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 10-209
PDB
Domain cluster: representative
D2 medium residues 254-328
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g7nA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.75 38.0 3.46e-01 76.0% 38.1%
3drnB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.65 47.0 3.74e-01 76.0% 70.7%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.64 57.0 3.71e-01 100.0% 68.7%
1eejA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 43.0 3.48e-01 70.7% 96.4%
152lA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.60 43.0 3.32e-01 80.0% 34.1%
2kseA00 1.20.5.1040 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Sensor protein qsec. 0.60 41.0 4.08e-01 70.7% 71.4%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.60 49.0 3.89e-01 88.0% 99.3%
6d0aA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 45.0 3.93e-01 94.7% 53.0%
4hwtA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.59 42.0 3.71e-01 74.7% 73.6%
3bc8A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 49.0 4.06e-01 93.3% 96.4%
6h9dA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.58 42.0 3.40e-01 77.3% 66.2%
5uaiA01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.58 41.0 3.06e-01 76.0% 49.0%
2o7iA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.57 42.0 2.87e-01 77.3% 73.2%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.56 43.0 3.71e-01 80.0% 82.0%
4bc3A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 39.0 2.80e-01 73.3% 48.6%
4hh2C04 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 41.0 3.57e-01 90.7% 52.1%
3ezhA00 1.20.120.960 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase NarX, sensor domain 0.54 43.0 3.78e-01 86.7% 78.1%
2b7jB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 38.0 3.00e-01 74.7% 72.5%
3jygA00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.54 40.0 3.10e-01 90.7% 33.9%
3hwcA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 47.0 3.43e-01 98.7% 57.1%
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.53 39.0 3.04e-01 78.7% 55.7%
1qoyA00 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.52 43.0 2.86e-01 89.3% 97.0%
2r0cA03 3.40.30.120 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.52 36.0 3.19e-01 72.0% 56.0%
5oesA04 3.40.50.1760 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic 0.52 38.0 3.24e-01 78.7% 90.3%
3q18A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 35.0 3.10e-01 72.0% 57.5%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3615409 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.69 49.0 4.31e-01 73.3% 53.3%
3954913 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.67 46.0 3.97e-01 70.7% 56.5%
2391719 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.66 49.0 4.56e-01 84.0% 63.4%
3193128 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.65 42.0 3.30e-01 85.3% 32.3%
4178886 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.65 45.0 4.08e-01 72.0% 60.0%
3178127 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.64 42.0 4.98e-01 73.3% 100.0%
3707297 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.61 43.0 4.76e-01 81.3% 100.0%
3789788 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.61 38.0 2.43e-01 77.3% 12.2%
3903603 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 40.0 4.01e-01 72.0% 66.7%
3290286 150.8.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE 0.61 47.0 3.50e-01 82.7% 88.1%
3928288 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.60 47.0 3.97e-01 88.0% 52.5%
3483987 3006.1.1.2 ↗ a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Gemin6_C 0.58 41.0 4.24e-01 74.7% 88.6%
4366177 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.57 44.0 3.05e-01 81.3% 35.2%
3256417 874.1.1.1 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge 0.55 51.0 3.19e-01 100.0% 40.0%
4307558 3681.1.1.0 ↗ a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit 0.55 44.0 3.80e-01 85.3% 57.4%
3240115 874.1.1.1 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge 0.54 48.0 3.34e-01 100.0% 67.2%
3734680 874.1.1.1 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge 0.53 49.0 3.26e-01 100.0% 54.5%
3205742 874.1.1.1 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge 0.52 47.0 3.01e-01 100.0% 44.2%
1916673 3758.1.1.2 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › HlyE 0.52 43.0 2.86e-01 89.3% 97.0%
3318660 874.1.1.1 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge 0.52 47.0 3.32e-01 100.0% 79.1%
2629809 4958.1.1.1 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 0.52 45.0 3.22e-01 100.0% 67.6%
4932735 4958.1.1.2 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_4 0.51 43.0 3.35e-01 100.0% 78.4%
3193917 874.1.1.1 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge 0.51 47.0 2.93e-01 100.0% 39.5%
3934186 874.1.1.1 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge 0.51 46.0 3.23e-01 100.0% 76.6%
4980711 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 41.0 3.55e-01 93.3% 71.2%
3972542 223.1.1.24 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.51 45.0 3.53e-01 100.0% 47.7%
3593491 874.1.1.1 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge 0.50 47.0 2.67e-01 100.0% 22.2%
3423772 4964.1.1.1 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.50 34.0 2.98e-01 70.7% 99.1%
3889525 874.1.1.1 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge 0.50 45.0 3.25e-01 100.0% 73.2%