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NC_019411.1__YP_006989995.1__D870_gp159__00262
Bact-VirNC_019411.1__YP_006989995.1__D870_gp159__00262
Identity
- Accession:
- NC_019411 ↗
- Kingdom:
- phage
Quality
81.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Jeanschmidtviridae›
Shapirovirus›
Caulobacter_phage_CcrSwift
TaxID: 2927984
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 39-149
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gi7A00 | 1.20.1270.180 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.58 | 41.0 | 4.24e-01 | 82.0% | 78.6% |
| 1lbvA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.57 | 32.0 | 2.95e-01 | 88.3% | 43.5% |
| 5hdiA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.56 | 43.0 | 3.00e-01 | 82.9% | 87.7% |
| 4hfvA02 | 6.10.280.170 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Substrate of the Dot/Icm secretion system | 0.55 | 32.0 | 4.04e-01 | 81.1% | 93.0% |
| 4gyiA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 35.0 | 3.76e-01 | 81.1% | 81.6% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3607863 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.62 | 36.0 | 3.88e-01 | 95.5% | 66.3% |
| 3626481 | 603.1.1.105 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 | 0.61 | 41.0 | 4.13e-01 | 93.7% | 69.1% |
| 1293726 | 150.7.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE › PE | 0.60 | 34.0 | 3.84e-01 | 77.5% | 72.9% |
| 3744181 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.59 | 50.0 | 3.71e-01 | 91.9% | 73.7% |
| 4499046 | 622.4.1.56 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › DUF3713 | 0.58 | 41.0 | 4.12e-01 | 82.9% | 72.7% |
| 3701064 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.57 | 40.0 | 3.60e-01 | 73.9% | 97.5% |
| 3774230 | 5073.1.1.0 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M | 0.57 | 51.0 | 3.52e-01 | 100.0% | 46.8% |
| 3495806 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 44.0 | 2.78e-01 | 83.8% | 41.0% |
| 3924372 | 2004.5.1.8 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › C9orf72-like | 0.55 | 45.0 | 3.61e-01 | 89.2% | 98.3% |
| 3239589 | 633.4.1.0 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor | 0.54 | 38.0 | 3.46e-01 | 74.8% | 87.1% |
| 3263604 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.53 | 37.0 | 3.80e-01 | 100.0% | 74.5% |
| 4637284 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.52 | 45.0 | 3.11e-01 | 97.3% | 61.0% |
| 4878411 | 603.2.1.1 ↗ | alpha bundles › STAT-like › STAT › STAT › STAT_alpha | 0.52 | 37.0 | 3.55e-01 | 73.9% | 66.2% |
| 3368923 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.52 | 41.0 | 3.53e-01 | 84.7% | 85.0% |
| None | — | 0.52 | 47.0 | 3.15e-01 | 100.0% | 61.6% | |
| 5018146 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.52 | 41.0 | 3.15e-01 | 82.9% | 45.7% |
| 3669151 | 109.3.1.134 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › NPH3 | 0.52 | 33.0 | 2.79e-01 | 78.4% | 37.3% |
| 3938199 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.52 | 43.0 | 3.69e-01 | 90.1% | 74.9% |
| 3487229 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 38.0 | 3.85e-01 | 79.3% | 76.5% |
| 3721264 | 5059.1.1.3 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT | 0.51 | 42.0 | 2.97e-01 | 90.1% | 58.8% |
| 3582184 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 37.0 | 2.95e-01 | 77.5% | 38.0% |