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NC_019411.1__YP_006990018.1__D870_gp136__00285

Bact-Vir

NC_019411.1__YP_006990018.1__D870_gp136__00285

Identity

Accession:
NC_019411 ↗
Kingdom:
phage

Quality

82.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Shapirovirus› Caulobacter_phage_CcrSwift

TaxID: 2927984

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-146
PDB
Domain cluster: rep: LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00263__D4-150
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tk1A00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.60 54.0 4.60e-01 100.0% 85.8%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.59 52.0 5.04e-01 100.0% 86.2%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.59 34.0 3.25e-01 71.8% 46.8%
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.58 39.0 3.91e-01 72.5% 67.2%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.57 51.0 4.67e-01 100.0% 86.8%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.56 50.0 4.84e-01 100.0% 87.1%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 50.0 4.73e-01 100.0% 96.8%
3imhA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 44.0 3.25e-01 84.7% 93.4%
2z6oA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 46.0 4.26e-01 100.0% 72.9%
2i0oA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 47.0 3.69e-01 100.0% 90.6%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 47.0 4.41e-01 100.0% 100.0%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 3.04e-01 93.1% 78.5%
1of5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 39.0 3.71e-01 81.7% 96.8%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.50 41.0 3.26e-01 85.5% 71.4%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3849839 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.70 46.0 5.21e-01 70.2% 87.0%
4403206 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.60 49.0 4.65e-01 99.2% 73.5%
3875809 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.59 52.0 4.85e-01 100.0% 77.0%
3534691 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.59 51.0 4.75e-01 100.0% 75.8%
3739953 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.58 48.0 4.56e-01 99.2% 74.8%
3056279 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.58 51.0 4.80e-01 99.2% 77.9%
4025435 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.58 51.0 4.58e-01 100.0% 80.5%
4381748 241.1.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.58 51.0 4.37e-01 99.2% 93.5%
3685749 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.57 50.0 4.80e-01 100.0% 84.0%
4137850 9.1.1.9 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeT 0.57 50.0 4.48e-01 98.5% 94.7%
5065294 4051.1.1.0 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.56 51.0 4.69e-01 100.0% 94.1%
3933484 241.1.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.56 50.0 4.70e-01 99.2% 89.1%
3993690 216.1.1.35 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Rgr-1_C 0.56 51.0 4.08e-01 100.0% 66.5%
3937237 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.56 50.0 4.61e-01 96.2% 89.1%
3611209 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.56 50.0 4.24e-01 100.0% 97.3%
3619456 216.1.1.24 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Med14_C 0.56 51.0 4.04e-01 100.0% 63.8%
5044414 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.56 45.0 3.56e-01 84.7% 89.1%
3396206 243.3.1.35 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF229 0.55 38.0 3.66e-01 71.0% 82.0%
136071 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.55 44.0 3.26e-01 84.7% 94.8%
3933073 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.55 46.0 4.02e-01 100.0% 61.6%
3270312 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.55 49.0 4.45e-01 99.2% 73.7%
3299865 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.54 45.0 4.21e-01 90.1% 91.5%
3174442 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 43.0 3.45e-01 87.8% 55.0%
3726297 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 40.0 3.47e-01 82.4% 89.5%