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NC_019411.1__YP_006990035.1__D870_gp119__00302

Bact-Vir

NC_019411.1__YP_006990035.1__D870_gp119__00302

Identity

Accession:
NC_019411 ↗
Kingdom:
phage

Quality

81.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Shapirovirus› Caulobacter_phage_CcrSwift

TaxID: 2927984

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-74
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.84 60.0 6.59e-01 74.3% 94.7%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 53.0 5.39e-01 100.0% 73.9%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 50.0 5.52e-01 70.0% 87.5%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 52.0 5.38e-01 72.9% 98.4%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 51.0 5.28e-01 71.4% 76.9%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 55.0 4.86e-01 80.0% 56.0%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 55.0 5.42e-01 80.0% 76.7%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 46.0 5.35e-01 70.0% 95.8%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 65.0 5.40e-01 98.6% 61.5%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 51.0 5.28e-01 77.1% 81.2%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 48.0 4.31e-01 70.0% 57.1%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.71 47.0 5.09e-01 70.0% 81.4%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 53.0 4.84e-01 80.0% 72.8%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.70 51.0 5.02e-01 78.6% 96.1%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.70 53.0 3.81e-01 82.9% 47.8%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.69 50.0 4.53e-01 77.1% 60.2%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.69 36.0 4.12e-01 100.0% 68.6%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 46.0 4.47e-01 70.0% 70.0%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 46.0 4.83e-01 70.0% 95.2%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 4.64e-01 82.9% 76.5%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 4.67e-01 78.6% 67.5%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.67 51.0 5.40e-01 100.0% 96.7%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 45.0 4.41e-01 71.4% 88.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.63 41.0 3.33e-01 100.0% 34.3%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 51.0 5.28e-01 95.7% 97.0%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.62 42.0 4.25e-01 87.1% 70.4%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 48.0 5.01e-01 94.3% 96.8%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 44.0 3.71e-01 80.0% 73.4%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 49.0 4.66e-01 98.6% 81.0%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.53e-01 82.9% 76.6%
2ox7A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.55 44.0 4.47e-01 90.0% 94.2%
2y8nB02 2.20.70.100 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.54 32.0 3.78e-01 77.1% 93.2%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 45.0 2.96e-01 92.9% 36.0%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 41.0 3.31e-01 84.3% 65.7%
2q5fA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.53 43.0 3.65e-01 97.1% 95.5%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 45.0 2.91e-01 92.9% 30.1%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 34.0 3.79e-01 78.6% 87.3%
2p1gA02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.52 45.0 4.05e-01 100.0% 72.0%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4665407 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.85 55.0 6.42e-01 75.7% 94.0%
4516378 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.82 58.0 5.81e-01 81.4% 72.9%
4680376 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.82 55.0 6.18e-01 78.6% 89.1%
4182977 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.75 53.0 5.72e-01 81.4% 86.7%
3507338 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 54.0 5.80e-01 81.4% 90.0%
3508441 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 56.0 5.06e-01 81.4% 61.1%
3927663 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 51.0 5.30e-01 87.1% 78.5%
4124780 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 57.0 5.65e-01 100.0% 80.8%
3236689 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 54.0 5.92e-01 100.0% 100.0%
4139778 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 57.0 5.69e-01 100.0% 82.2%
3502388 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 54.0 5.32e-01 82.9% 74.7%
3517377 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 53.0 4.99e-01 80.0% 64.7%
4185009 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 56.0 5.76e-01 100.0% 90.8%
4584943 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 55.0 5.59e-01 100.0% 84.3%
3519597 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 55.0 4.96e-01 84.3% 61.1%
3926017 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 49.0 5.46e-01 87.1% 92.7%
3569639 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 48.0 4.62e-01 70.0% 70.0%
4084850 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 55.0 5.71e-01 100.0% 90.8%
4104821 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 55.0 5.42e-01 100.0% 78.7%
3548244 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 48.0 5.06e-01 70.0% 93.3%
3925408 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 48.0 5.42e-01 87.1% 98.0%
4261362 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 55.0 5.54e-01 100.0% 84.3%
4505797 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 54.0 5.59e-01 100.0% 90.8%
4660084 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 54.0 5.49e-01 100.0% 85.5%
4527355 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 53.0 5.40e-01 82.9% 88.4%
3742291 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 46.0 4.81e-01 70.0% 90.8%
3899829 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 46.0 4.55e-01 70.0% 76.0%
4302032 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 52.0 5.43e-01 82.9% 93.8%
3876823 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 47.0 4.61e-01 71.4% 76.0%
3899851 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 46.0 4.76e-01 70.0% 86.2%
3755099 604.1.1.97 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SH3_1 0.68 46.0 4.34e-01 70.0% 67.1%
4483819 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 46.0 4.69e-01 71.4% 81.4%
165220 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 45.0 4.53e-01 70.0% 80.8%
3269758 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 45.0 4.39e-01 70.0% 71.2%
3399284 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 46.0 4.74e-01 71.4% 89.2%
3696092 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 46.0 4.65e-01 71.4% 81.4%
3904253 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 45.0 4.66e-01 70.0% 90.8%
4610859 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 47.0 4.85e-01 74.3% 89.2%
3563539 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 46.0 4.60e-01 71.4% 82.9%
4019925 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 45.0 4.54e-01 70.0% 80.0%
3931419 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 44.0 4.17e-01 70.0% 68.2%
3554994 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 49.0 4.56e-01 81.4% 77.5%
3625909 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 44.0 4.21e-01 70.0% 71.2%
3933965 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 44.0 4.67e-01 71.4% 96.6%
3543889 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.64 43.0 2.67e-01 70.0% 13.3%
3575263 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 52.0 5.39e-01 98.6% 98.5%
3267416 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 48.0 4.65e-01 92.9% 77.5%
3561013 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 47.0 4.60e-01 88.6% 78.7%
3914346 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 48.0 4.49e-01 94.3% 68.9%
3898363 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 48.0 4.82e-01 97.1% 90.0%
3487686 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.46e-01 91.4% 89.4%
3449498 4286.1.1.1 ↗ beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.56 48.0 4.11e-01 95.7% 93.9%
3567457 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 46.0 4.64e-01 91.4% 95.7%
3621099 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.88e-01 90.0% 78.1%
4969566 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.53 44.0 4.33e-01 100.0% 87.5%
3828657 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.95e-01 98.6% 94.0%
3709028 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.50 42.0 2.91e-01 92.9% 44.8%
D2 high residues 84-158
PDB
Domain cluster: representative