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NC_019420.1__YP_006990436.1__D877_gp06__00006

Bact-Vir

NC_019420.1__YP_006990436.1__D877_gp06__00006

Identity

Accession:
NC_019420 ↗
Kingdom:
phage

Quality

66.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kafunavirus› Edwardsiella_phage_KF-1

TaxID: 1244856

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-86
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 39.0 3.83e-01 82.1% 61.7%
1t07A00 1.10.3880.10 Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX 0.56 42.0 4.33e-01 79.8% 91.4%
1eyqA02 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.52 36.0 2.89e-01 71.4% 48.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4013051 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.59 40.0 4.01e-01 73.8% 68.2%
3688523 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 44.0 4.22e-01 77.4% 75.8%
5049855 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 35.0 4.05e-01 84.5% 83.3%
3845445 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.58 31.0 3.96e-01 75.0% 95.6%
4504547 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.57 35.0 2.74e-01 88.1% 27.4%
4498193 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.56 44.0 3.55e-01 84.5% 67.9%
2878975 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.56 35.0 3.64e-01 88.1% 68.4%
3499880 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.56 34.0 3.05e-01 88.1% 41.6%
5040191 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.55 35.0 3.89e-01 88.1% 84.4%
3731209 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.55 34.0 3.28e-01 88.1% 52.0%
3220907 376.1.1.19 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv 0.55 36.0 3.78e-01 82.1% 73.3%
4028414 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.54 41.0 3.63e-01 81.0% 66.1%
4023822 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.53 34.0 2.85e-01 90.5% 36.0%
3611182 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.53 35.0 3.57e-01 88.1% 70.0%
3714738 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.52 34.0 3.06e-01 88.1% 46.7%
3675510 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.52 35.0 4.04e-01 84.5% 98.3%
3371462 376.1.3.25 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD-1st_NSD 0.52 39.0 3.23e-01 79.8% 46.7%
5024580 7515.1.1.6 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest 0.50 35.0 2.40e-01 72.6% 77.4%
D2 medium residues 87-152
PDB