Back to structures

NC_019420.1__YP_006990441.1__D877_gp11__00011

Bact-Vir

NC_019420.1__YP_006990441.1__D877_gp11__00011

Identity

Accession:
NC_019420 ↗
Kingdom:
phage

Quality

91.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-113
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF18836.8 best B_solenoid_ydck 22.0 1.50e-04 15.6% 94.1%
PF18836.8 B_solenoid_ydck 16.1 1.20e-02 15.6% 94.1%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ea9A02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.75 64.0 6.40e-01 100.0% 89.1%
1fxjA02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.75 61.0 6.53e-01 96.3% 100.0%
3bfpA02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.73 63.0 6.13e-01 100.0% 83.2%
3f1xA02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.73 59.0 6.32e-01 94.5% 96.8%
1mr7C00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.73 66.0 5.36e-01 98.2% 73.8%
3cj8A03 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.72 63.0 5.72e-01 100.0% 71.4%
1t3dA02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.72 58.0 5.64e-01 100.0% 77.5%
4n27A00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.69 63.0 5.30e-01 100.0% 60.6%
7ar9z01 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.69 64.0 4.98e-01 100.0% 55.4%
6sc4A00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.69 64.0 5.38e-01 100.0% 73.4%
2iu8C02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.69 64.0 5.04e-01 100.0% 66.4%
3t57A01 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.69 64.0 5.02e-01 100.0% 65.3%
3r1wA00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.68 63.0 5.28e-01 100.0% 71.7%
7ar7x01 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.67 63.0 5.12e-01 100.0% 60.0%
1hv9B02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.67 63.0 5.14e-01 100.0% 60.8%
3hjjC00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.66 61.0 5.08e-01 100.0% 64.9%
3tv0A00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.66 60.0 5.50e-01 100.0% 88.1%
3c8vA02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.64 58.0 4.52e-01 100.0% 58.1%
5l6vE02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.63 57.0 5.37e-01 97.2% 86.3%
3gueA02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.56 51.0 5.13e-01 99.1% 100.0%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3982199 208.1.1.8 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › B_solenoid_ydck 0.97 79.0 7.15e-01 83.5% 65.5%
319085 208.1.1.8 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › B_solenoid_ydck 0.94 91.0 6.19e-01 100.0% 36.4%
163455 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.86 59.0 6.92e-01 90.8% 98.7%
5041808 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.86 61.0 7.08e-01 78.0% 100.0%
172788 208.1.1.4 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Hexapep_2 0.85 57.0 6.61e-01 72.5% 93.8%
979103 208.1.1.17 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C 0.85 56.0 6.42e-01 90.8% 90.1%
154921 208.1.1.20 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep, GMPPB_C 0.84 57.0 6.61e-01 92.7% 93.8%
3642857 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.84 65.0 4.80e-01 94.5% 34.4%
4938009 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.84 62.0 5.13e-01 100.0% 46.1%
3960906 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.79 60.0 6.39e-01 78.0% 95.8%
3286633 208.1.1.17 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C 0.76 61.0 6.23e-01 97.2% 86.7%
5050442 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.75 64.0 5.18e-01 89.9% 71.3%
1189689 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.75 64.0 6.16e-01 100.0% 81.0%
3182022 208.1.1.2 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Mac 0.75 63.0 5.07e-01 89.9% 80.3%
4874103 208.1.1.4 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Hexapep_2 0.74 63.0 5.34e-01 89.9% 71.4%
3502847 208.1.1.16 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B 0.73 60.0 5.53e-01 100.0% 67.9%
5081284 208.1.1.16 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B 0.73 61.0 6.21e-01 100.0% 91.4%
3705657 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.72 67.0 4.85e-01 100.0% 46.3%
2899619 208.1.1.9 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › DCTN5 0.72 61.0 5.14e-01 91.7% 68.1%
3289951 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.72 65.0 5.32e-01 97.2% 84.2%
3427119 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.71 66.0 5.91e-01 98.2% 74.5%
5040143 208.1.1.6 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep_2 0.71 66.0 5.08e-01 99.1% 70.7%
3977237 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.71 66.0 5.77e-01 100.0% 83.2%
3960494 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.71 63.0 5.06e-01 95.4% 68.0%
5075068 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.70 64.0 5.38e-01 97.2% 68.4%
5052035 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.70 65.0 4.81e-01 100.0% 43.1%
5053707 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.69 64.0 4.92e-01 100.0% 49.4%
5052995 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.69 65.0 4.95e-01 100.0% 49.1%
5052044 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.69 64.0 5.18e-01 100.0% 56.0%
3289985 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.69 63.0 5.14e-01 97.2% 81.1%
4401275 208.1.1.4 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Hexapep_2 0.69 64.0 4.79e-01 100.0% 58.0%
5075151 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.69 64.0 5.37e-01 100.0% 80.0%
4449489 208.1.1.18 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep+Hexapep_GlmU 0.69 64.0 4.72e-01 100.0% 54.9%
4514474 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.69 64.0 4.73e-01 100.0% 53.5%
4441944 208.1.1.21 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep, Hexapep_2, GMPPB_C 0.69 63.0 4.74e-01 100.0% 54.3%
3962277 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.69 64.0 5.40e-01 100.0% 70.1%
3840043 208.1.1.4 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Hexapep_2 0.69 63.0 4.86e-01 100.0% 59.6%
4038803 208.1.1.3 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Acetyltransf_11 0.68 64.0 4.70e-01 100.0% 50.9%
4974806 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.68 63.0 5.03e-01 100.0% 57.6%
3970744 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.68 61.0 4.87e-01 97.2% 51.0%
7248 208.1.1.9 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › DCTN5 0.68 64.0 5.39e-01 100.0% 70.5%
4362605 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.68 63.0 4.73e-01 100.0% 54.5%
3797002 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.68 63.0 6.12e-01 100.0% 91.6%
315100 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.68 63.0 5.33e-01 100.0% 70.5%
4143976 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.68 63.0 5.24e-01 100.0% 71.4%
3185731 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.68 63.0 5.13e-01 100.0% 64.1%
3682654 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.68 61.0 3.87e-01 96.3% 22.4%
4410916 208.1.1.4 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Hexapep_2 0.68 63.0 4.83e-01 100.0% 59.6%
3206741 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.68 63.0 4.95e-01 100.0% 71.6%
4977409 208.1.1.16 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B 0.68 63.0 6.01e-01 99.1% 90.4%
4635247 208.1.1.20 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep, GMPPB_C 0.68 63.0 4.70e-01 100.0% 54.9%
5082539 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.68 63.0 5.33e-01 100.0% 91.2%
5073626 208.1.1.17 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C 0.67 63.0 5.94e-01 100.0% 87.7%
5075621 208.1.1.17 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C 0.67 63.0 5.83e-01 100.0% 84.4%
3365604 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.67 59.0 5.33e-01 93.6% 80.7%
4997189 208.1.1.17 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C 0.67 62.0 5.79e-01 100.0% 89.5%
None 0.66 61.0 5.18e-01 100.0% 74.9%
4940467 208.1.1.17 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C 0.66 61.0 5.11e-01 100.0% 76.1%
5074368 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.66 61.0 4.63e-01 100.0% 60.0%
5047610 208.1.1.17 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C 0.66 61.0 5.02e-01 100.0% 74.1%
4823836 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.65 61.0 5.62e-01 100.0% 91.2%
3311170 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.62 57.0 4.54e-01 100.0% 58.6%