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NC_019444.1__YP_007001743.1__X__00017
Bact-VirNC_019444.1__YP_007001743.1__X__00017
Identity
- Accession:
- NC_019444 ↗
- Kingdom:
- phage
Quality
89.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Namakavirus›
Synechococcus_phage_S-MbCM6
TaxID: 3126011
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-72
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ctoD00 | 3.40.1620.10 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain | 0.64 | 51.0 | 5.41e-01 | 84.7% | 100.0% |
| 4jn3A01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.62 | 44.0 | 3.22e-01 | 76.4% | 48.6% |
| 3ieyB00 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.62 | 42.0 | 3.33e-01 | 70.8% | 36.2% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.57 | 40.0 | 3.68e-01 | 73.6% | 61.5% |
| 3snxA00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 38.0 | 2.37e-01 | 77.8% | 96.5% |
| 3hw5B00 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.53 | 37.0 | 2.73e-01 | 73.6% | 47.2% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3956773 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.77 | 63.0 | 6.04e-01 | 93.1% | 77.5% |
| 4169084 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.74 | 58.0 | 5.94e-01 | 94.4% | 85.7% |
| 3953259 | 4267.1.1.0 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like | 0.72 | 53.0 | 5.80e-01 | 77.8% | 91.7% |
| 2756766 | 2008.2.1.2 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › Sen15 | 0.66 | 45.0 | 3.65e-01 | 70.8% | 48.5% |
| 3742541 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.65 | 45.0 | 2.89e-01 | 72.2% | 26.9% |
| 4358836 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.65 | 58.0 | 5.56e-01 | 94.4% | 93.8% |
| 2629018 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.64 | 60.0 | 5.48e-01 | 100.0% | 87.0% |
| 2807885 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.64 | 52.0 | 4.94e-01 | 86.1% | 90.6% |
| 4611720 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.63 | 58.0 | 5.55e-01 | 95.8% | 98.8% |
| 1392754 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.62 | 42.0 | 3.87e-01 | 70.8% | 57.9% |
| 5007352 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.60 | 43.0 | 4.09e-01 | 75.0% | 63.5% |
| 134503 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.60 | 52.0 | 4.84e-01 | 95.8% | 81.3% |
| 3589433 | 4267.1.1.0 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like | 0.59 | 45.0 | 4.72e-01 | 81.9% | 96.9% |
| 2771875 | 3688.1.1.1 ↗ | a+b two layers › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › UbiD_N | 0.59 | 43.0 | 3.84e-01 | 77.8% | 79.0% |
| 3997445 | 261.1.1.1 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT | 0.57 | 39.0 | 2.44e-01 | 73.6% | 51.0% |
| 2392643 | 2008.1.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Flu_PA | 0.54 | 38.0 | 2.64e-01 | 73.6% | 37.3% |
| 3348286 | 323.1.1.7 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Transferase | 0.51 | 40.0 | 3.18e-01 | 86.1% | 88.0% |