←Back to structures
NC_019444.1__YP_007001792.1__X__00066
Bact-VirNC_019444.1__YP_007001792.1__X__00066
Identity
- Accession:
- NC_019444 ↗
- Kingdom:
- phage
Quality
81.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Namakavirus›
Synechococcus_phage_S-MbCM6
TaxID: 3126011
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-68
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24012.2 best | DUF7326 | 46.9 | 4.00e-12 | 100.0% | 73.7% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bskB00 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.74 | 52.0 | 5.14e-01 | 80.0% | 69.2% |
| 2p3yA02 | 1.10.3360.10 | Mainly Alpha › Orthogonal Bundle › VPA0735-like fold › VPA0735-like domain | 0.66 | 45.0 | 3.74e-01 | 98.3% | 40.2% |
| 2a2jA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.64 | 46.0 | 3.26e-01 | 100.0% | 23.2% |
| 3lfuA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.64 | 43.0 | 4.18e-01 | 71.7% | 98.6% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.62 | 51.0 | 4.47e-01 | 95.0% | 86.6% |
| 4cclA02 | 3.40.366.30 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 | 0.62 | 45.0 | 3.33e-01 | 80.0% | 43.5% |
| 1cbyA00 | 3.40.198.10 | Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like | 0.61 | 49.0 | 3.31e-01 | 90.0% | 48.9% |
| 3whjA00 | 6.10.140.1710 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 41.0 | 3.35e-01 | 71.7% | 57.7% |
| 7y11B01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.59 | 41.0 | 4.06e-01 | 78.3% | 68.3% |
| 3q9oA02 | 3.90.1350.10 | Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain | 0.59 | 52.0 | 3.80e-01 | 100.0% | 88.0% |
| 2w4sA00 | 1.10.10.1440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain | 0.59 | 38.0 | 3.39e-01 | 98.3% | 44.2% |
| 2b61A02 | 1.10.1740.110 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.59 | 47.0 | 4.08e-01 | 95.0% | 68.3% |
| 2lfwA01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.58 | 44.0 | 3.44e-01 | 100.0% | 36.2% |
| 5efrA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.57 | 37.0 | 3.49e-01 | 81.7% | 54.8% |
| 5f1cA01 | 1.10.287.940 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel | 0.57 | 42.0 | 4.23e-01 | 80.0% | 91.5% |
| 2hl7A00 | 1.10.8.640 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Cytochrome C biogenesis protein | 0.56 | 48.0 | 4.42e-01 | 98.3% | 82.9% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.56 | 40.0 | 3.76e-01 | 75.0% | 69.0% |
| 5tprA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.55 | 47.0 | 3.29e-01 | 98.3% | 61.1% |
| 2h5nC00 | 1.10.3680.10 | Mainly Alpha › Orthogonal Bundle › TerB-like › TerB-like | 0.54 | 47.0 | 3.78e-01 | 100.0% | 52.4% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.54 | 38.0 | 3.46e-01 | 75.0% | 67.1% |
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 39.0 | 3.99e-01 | 80.0% | 80.7% |
| 4hstB03 | 1.10.1400.10 | Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region | 0.53 | 47.0 | 3.65e-01 | 100.0% | 54.3% |
| 3hdeC00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.53 | 42.0 | 3.26e-01 | 98.3% | 92.1% |
| 2c35A00 | 1.20.1250.40 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › RNA Polymerase II, Rpb4 subunit | 0.51 | 39.0 | 3.08e-01 | 83.3% | 46.9% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3448413 | 4120.1.1.1 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › zf-Tim10_DDP | 0.77 | 54.0 | 4.85e-01 | 80.0% | 55.0% |
| 4025873 | 4120.1.1.1 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › zf-Tim10_DDP | 0.76 | 53.0 | 5.07e-01 | 80.0% | 62.9% |
| 4943285 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 65.0 | 4.98e-01 | 100.0% | 82.2% |
| 3303823 | 141.1.1.4 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_synth_C | 0.72 | 62.0 | 4.05e-01 | 98.3% | 84.3% |
| 3088265 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.70 | 52.0 | 4.68e-01 | 81.7% | 57.8% |
| 4118420 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.65 | 48.0 | 4.68e-01 | 83.3% | 72.3% |
| 3715403 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.61 | 44.0 | 4.45e-01 | 100.0% | 80.0% |
| 3436965 | 3711.1.1.0 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein | 0.60 | 45.0 | 3.92e-01 | 81.7% | 78.9% |
| 3687243 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 42.0 | 4.06e-01 | 81.7% | 75.7% |
| 3296786 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.57 | 50.0 | 4.00e-01 | 100.0% | 92.5% |
| 3608012 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.56 | 44.0 | 3.96e-01 | 85.0% | 92.9% |
| 4574972 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.56 | 38.0 | 3.81e-01 | 80.0% | 70.0% |
| 3607086 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.56 | 41.0 | 3.69e-01 | 76.7% | 91.3% |
| 3770974 | 4956.1.1.0 ↗ | a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.55 | 41.0 | 4.19e-01 | 83.3% | 86.7% |
| 3876483 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.55 | 39.0 | 3.96e-01 | 76.7% | 83.3% |
| 3962324 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.55 | 41.0 | 2.89e-01 | 80.0% | 69.0% |
| 407167 | 3824.1.1.1 ↗ | alpha bundles › HIV Rev › HIV Rev › HIV Rev › REV | 0.55 | 39.0 | 3.95e-01 | 75.0% | 75.8% |
| 4066690 | 633.12.1.0 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like | 0.55 | 48.0 | 4.05e-01 | 98.3% | 81.0% |
| 3414102 | 5055.1.1.0 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel | 0.54 | 39.0 | 3.79e-01 | 80.0% | 100.0% |
| 3334694 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.54 | 47.0 | 4.27e-01 | 100.0% | 89.4% |
| 2141248 | 531.3.1.1 ↗ | alpha arrays › Domains of FliG › N-terminal domain of FliG › N-terminal domain of FliG › FliG_N | 0.52 | 40.0 | 3.41e-01 | 95.0% | 49.5% |
| 3452624 | 2008.6.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central | 0.52 | 41.0 | 2.79e-01 | 93.3% | 20.4% |
| 3616157 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.52 | 39.0 | 3.37e-01 | 80.0% | 54.7% |
| 3341306 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.51 | 44.0 | 3.55e-01 | 100.0% | 90.4% |
| 3401938 | 3602.1.1.14 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › DUF733 | 0.51 | 44.0 | 4.17e-01 | 100.0% | 100.0% |
| 3740332 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.51 | 43.0 | 3.98e-01 | 100.0% | 78.8% |
| 4293828 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.50 | 39.0 | 3.18e-01 | 88.3% | 88.0% |