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NC_019457.1__YP_007003049.1__F353_gp09__00009

Bact-Vir

NC_019457.1__YP_007003049.1__F353_gp09__00009

Identity

Accession:
NC_019457 ↗
Kingdom:
phage

Quality

92.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_CP-T1

TaxID: 10689

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-76
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.76 46.0 2.94e-01 70.8% 14.3%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.71 43.0 2.78e-01 73.6% 14.1%
1itvA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.70 44.0 3.22e-01 100.0% 23.6%
5ov3B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.70 43.0 2.81e-01 70.8% 14.9%
1genA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.69 42.0 3.05e-01 72.2% 22.5%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.69 62.0 5.77e-01 100.0% 87.6%
1fblA02 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.68 42.0 3.05e-01 70.8% 23.6%
3bpqD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.67 61.0 5.75e-01 100.0% 88.4%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.65 44.0 2.80e-01 100.0% 14.0%
2djhA00 3.30.2310.30 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › Colicin E5 C-terminal ribonuclease domain (CRD) 0.64 58.0 5.27e-01 100.0% 80.2%
4ew5A00 3.10.450.160 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › inner membrane protein cigr 0.64 46.0 4.19e-01 77.8% 61.8%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 44.0 2.75e-01 72.2% 17.2%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 46.0 3.64e-01 100.0% 39.7%
2l1sA00 3.10.450.160 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › inner membrane protein cigr 0.61 50.0 4.80e-01 90.3% 80.7%
3lp9A00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.58 40.0 2.82e-01 100.0% 22.9%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.57 39.0 3.49e-01 72.2% 92.2%
1fwxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 2.97e-01 100.0% 15.8%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 38.0 2.31e-01 70.8% 13.0%
2htaA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 35.0 2.36e-01 72.2% 15.5%
4my0A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 47.0 3.79e-01 97.2% 63.6%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.54 38.0 3.82e-01 98.6% 73.6%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 46.0 4.28e-01 100.0% 90.2%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.53 38.0 3.88e-01 100.0% 83.6%
4ba0A01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.52 42.0 3.18e-01 94.4% 88.9%
2xvlA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.52 45.0 3.20e-01 100.0% 84.6%
3w0fA01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.51 41.0 3.52e-01 88.9% 87.4%
1erjB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.78e-01 95.8% 80.2%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5045528 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.76 42.0 2.72e-01 70.8% 12.9%
3800021 5.1.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.75 44.0 3.12e-01 100.0% 20.6%
3632804 5.1.4.661 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.72 47.0 2.88e-01 100.0% 11.7%
5023940 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.72 62.0 6.35e-01 100.0% 95.7%
5054848 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.72 42.0 3.75e-01 100.0% 42.0%
3487861 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.72 43.0 2.70e-01 91.7% 11.3%
3490808 5.1.4.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.71 43.0 2.67e-01 72.2% 11.0%
5042309 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.71 64.0 5.94e-01 100.0% 80.0%
3266024 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.69 40.0 2.60e-01 70.8% 12.8%
3651019 5.1.4.101 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.69 47.0 3.15e-01 100.0% 18.5%
3457581 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.68 46.0 2.94e-01 100.0% 14.2%
2447618 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.67 39.0 2.62e-01 100.0% 14.8%
3263689 5.1.4.348 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_1st 0.66 41.0 2.61e-01 70.8% 12.9%
3665959 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.66 45.0 2.84e-01 100.0% 13.8%
3854218 5.1.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.66 41.0 2.96e-01 70.8% 22.7%
2089781 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.65 53.0 5.01e-01 100.0% 75.0%
None — 0.65 42.0 2.64e-01 70.8% 13.0%
3948032 3155.1.1.1 ↗ a+b two layers › Uncharacterized protein yohN › Uncharacterized protein yohN › Uncharacterized protein yohN › RcnB 0.64 54.0 5.33e-01 93.1% 87.2%
185723 3388.1.1.0 ↗ 0.64 46.0 4.19e-01 77.8% 61.8%
4425810 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 39.0 4.23e-01 70.8% 75.0%
3499683 5.1.5.54 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_NOL10_N 0.62 43.0 2.71e-01 91.7% 14.1%
None — 0.62 43.0 2.71e-01 79.2% 14.6%
3744425 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.62 43.0 2.73e-01 100.0% 13.0%
None — 0.60 41.0 2.55e-01 70.8% 14.1%
4011732 5.1.4.446 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd, Beta-prop_WDR36-Utp21_1st 0.60 43.0 2.41e-01 79.2% 6.6%
None — 0.58 41.0 2.61e-01 100.0% 13.5%
3914877 5.1.4.158 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_HPS5 0.58 46.0 2.91e-01 100.0% 16.4%
3895142 5.1.3.216 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_HPS5 0.57 47.0 3.47e-01 100.0% 34.2%
3260479 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 50.0 3.08e-01 100.0% 17.6%
4195544 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.57 38.0 2.35e-01 70.8% 14.3%
3906360 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.56 40.0 2.57e-01 73.6% 19.7%
None — 0.56 39.0 2.39e-01 75.0% 21.7%
3513091 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 39.0 3.22e-01 73.6% 55.2%
3684172 5.1.5.45 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PROPPIN 0.53 39.0 2.47e-01 77.8% 95.3%
5006697 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 43.0 2.94e-01 100.0% 90.0%
3853928 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.51 41.0 2.71e-01 94.4% 79.2%
3784858 5.1.4.362 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_VPS8 0.51 46.0 2.78e-01 100.0% 81.3%
3717097 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.50 44.0 2.62e-01 100.0% 13.3%
3712069 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 42.0 2.64e-01 88.9% 77.4%
3167247 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 41.0 2.67e-01 94.4% 92.5%