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NC_019487.1__YP_007003272.1__F373_gp015__00015

Bact-Vir

NC_019487.1__YP_007003272.1__F373_gp015__00015

Identity

Accession:
NC_019487 ↗
Kingdom:
phage

Quality

79.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Bacillus_phage_SP-10

TaxID: 941058

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-94
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.60 53.0 4.16e-01 100.0% 71.0%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 36.0 4.03e-01 76.4% 82.1%
4g29A00 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.57 51.0 4.15e-01 100.0% 75.3%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.55 32.0 2.75e-01 78.7% 34.3%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 40.0 3.76e-01 76.4% 88.2%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.55 32.0 3.81e-01 74.2% 86.7%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.54 38.0 3.43e-01 75.3% 83.7%
1yb3A00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 41.0 3.37e-01 84.3% 56.4%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 37.0 3.61e-01 75.3% 77.7%
2furB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 37.0 2.96e-01 75.3% 94.2%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.52 39.0 3.56e-01 77.5% 76.1%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.64e-01 76.4% 86.0%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 35.0 3.12e-01 70.8% 82.4%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 34.0 3.62e-01 75.3% 78.9%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.51 36.0 3.01e-01 74.2% 50.3%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 32.0 3.48e-01 74.2% 76.3%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3180837 1.1.5.30 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.61 42.0 3.07e-01 70.8% 77.6%
3633728 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 43.0 4.00e-01 75.3% 75.7%
3177726 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 43.0 3.41e-01 75.3% 53.5%
7410 219.1.1.64 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PMT_C3 0.60 53.0 4.16e-01 100.0% 71.4%
3731305 219.1.1.93 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.59 40.0 3.54e-01 77.5% 48.8%
3342167 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 47.0 3.91e-01 87.6% 84.2%
4019707 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 42.0 3.42e-01 75.3% 50.0%
4332533 220.1.1.12 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.58 46.0 3.51e-01 87.6% 48.2%
3597380 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 42.0 3.85e-01 77.5% 81.7%
3627921 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 47.0 3.88e-01 89.9% 80.6%
3609858 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.57 42.0 4.02e-01 78.7% 82.9%
3251228 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 46.0 3.93e-01 88.8% 73.1%
3577792 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.57 38.0 3.46e-01 77.5% 51.7%
3480564 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 40.0 3.51e-01 75.3% 81.4%
5078649 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.56 48.0 3.74e-01 96.6% 69.5%
3391330 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.56 41.0 3.74e-01 77.5% 78.3%
3591170 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.56 41.0 3.73e-01 77.5% 77.5%
3596842 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 41.0 3.78e-01 78.7% 73.3%
4890881 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.56 40.0 3.65e-01 77.5% 82.5%
3271265 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 40.0 3.64e-01 75.3% 85.0%
3495962 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 41.0 3.78e-01 78.7% 80.0%
3236876 1.1.5.49 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.55 39.0 2.81e-01 73.0% 88.4%
3804236 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.83e-01 88.8% 84.3%
3478042 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 48.0 4.42e-01 100.0% 89.2%
3593275 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.77e-01 77.5% 81.8%
3257454 220.1.1.12 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.54 44.0 3.41e-01 88.8% 48.8%
3264990 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 46.0 4.26e-01 94.4% 84.3%
2532980 219.1.1.53 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Vasohibin 0.54 46.0 3.39e-01 97.8% 54.7%
3401352 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 3.55e-01 77.5% 92.5%
3414950 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 46.0 4.30e-01 98.9% 87.0%
3989031 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.53 47.0 3.43e-01 98.9% 76.0%
3564421 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 43.0 4.00e-01 89.9% 99.1%
3448327 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.53 36.0 3.93e-01 75.3% 90.0%
3771406 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 4.01e-01 93.3% 86.4%
3282528 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.53 45.0 3.48e-01 100.0% 74.0%
4259027 9.3.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.52 37.0 3.36e-01 74.2% 66.7%
3900957 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 37.0 3.33e-01 75.3% 64.6%
3801890 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 37.0 2.89e-01 74.2% 79.5%
3742122 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 42.0 3.46e-01 89.9% 79.4%
3247329 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 37.0 3.54e-01 77.5% 76.4%
3956879 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.51 40.0 3.10e-01 83.1% 76.9%
4067273 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.51 38.0 3.15e-01 78.7% 99.4%
3899494 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.69e-01 89.9% 90.0%
3882182 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.50 43.0 3.85e-01 96.6% 73.1%
4045121 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.50 37.0 3.88e-01 78.7% 87.5%