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NC_019487.1__YP_007003336.1__F373_gp079__00079
Bact-VirNC_019487.1__YP_007003336.1__F373_gp079__00079
Identity
- Accession:
- NC_019487 ↗
- Kingdom:
- phage
Quality
71.3
mean pLDDT
Taxonomy
TaxID: 941058
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-77
Domain cluster:
rep: OM158235.1__UKL14753.1__C121_20__00020__D3-61
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hm2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 43.0 | 3.23e-01 | 73.2% | 52.0% |
| 1l3iA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 46.0 | 3.37e-01 | 100.0% | 32.4% |
| 2cc6A00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.57 | 43.0 | 4.50e-01 | 100.0% | 87.5% |
| 3g3oA00 | 3.20.100.30 | Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › VTC, catalytic tunnel domain | 0.54 | 42.0 | 2.87e-01 | 87.3% | 97.5% |
| 2zewB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 41.0 | 3.34e-01 | 87.3% | 77.6% |
| 5t89Y06 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 37.0 | 3.40e-01 | 100.0% | 56.5% |
| 5zspA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 41.0 | 3.53e-01 | 100.0% | 51.2% |
| 2yvlA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 47.0 | 3.43e-01 | 100.0% | 45.5% |
| 3wo4C03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 37.0 | 3.26e-01 | 100.0% | 50.5% |
| 3btxA00 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.51 | 41.0 | 3.13e-01 | 97.2% | 92.2% |
| 1d0nA02 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.50 | 40.0 | 3.49e-01 | 87.3% | 90.0% |
| 4issA03 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.50 | 44.0 | 3.59e-01 | 100.0% | 51.8% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3949585 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.73 | 57.0 | 4.77e-01 | 100.0% | 50.4% |
| 4996916 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.61 | 47.0 | 3.44e-01 | 84.5% | 55.1% |
| None | — | 0.60 | 46.0 | 3.38e-01 | 98.6% | 31.9% | |
| 9346 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.59 | 46.0 | 3.36e-01 | 100.0% | 32.3% |
| 3713781 | 868.1.1.9 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › RESC1_2 | 0.58 | 44.0 | 3.10e-01 | 87.3% | 47.9% |
| 3229438 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.57 | 50.0 | 3.54e-01 | 100.0% | 42.6% |
| 4336917 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.57 | 44.0 | 3.18e-01 | 98.6% | 30.3% |
| 3592631 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.57 | 44.0 | 3.00e-01 | 88.7% | 47.7% |
| 3740450 | 328.1.1.3 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 | 0.56 | 46.0 | 4.25e-01 | 97.2% | 70.0% |
| 3734676 | 2003.1.5.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GCD14 | 0.56 | 52.0 | 3.35e-01 | 100.0% | 36.2% |
| 3980749 | 304.158.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d | 0.56 | 46.0 | 3.24e-01 | 93.0% | 94.2% |
| 3275563 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.55 | 43.0 | 2.91e-01 | 85.9% | 43.5% |
| 3972395 | 101.1.2.847 ↗ | alpha arrays › HTH › HTH › winged helix domain › GDH_ACT1 | 0.55 | 46.0 | 3.55e-01 | 100.0% | 43.8% |
| 5057906 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.55 | 51.0 | 4.39e-01 | 100.0% | 73.3% |
| 4235559 | 304.8.1.61 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GDH_ACT1 | 0.55 | 46.0 | 3.53e-01 | 100.0% | 43.8% |
| 5052015 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.55 | 50.0 | 4.36e-01 | 100.0% | 68.6% |
| 3281354 | 304.8.1.61 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GDH_ACT1 | 0.54 | 46.0 | 3.66e-01 | 100.0% | 53.1% |
| 3624396 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.54 | 41.0 | 2.90e-01 | 80.3% | 45.5% |
| 3393304 | 2003.1.5.36 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Gcd10p | 0.54 | 50.0 | 3.44e-01 | 100.0% | 40.8% |
| 4935587 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.54 | 49.0 | 3.70e-01 | 100.0% | 50.0% |
| 3605041 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.53 | 43.0 | 3.37e-01 | 94.4% | 83.3% |
| 4931813 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.53 | 48.0 | 3.61e-01 | 100.0% | 50.9% |
| 3282303 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.53 | 46.0 | 3.18e-01 | 100.0% | 28.0% |
| 4938781 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.53 | 48.0 | 3.60e-01 | 100.0% | 47.9% |
| 4986411 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.53 | 48.0 | 3.41e-01 | 100.0% | 42.4% |
| 5028052 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.52 | 47.0 | 3.19e-01 | 100.0% | 40.0% |
| 3933748 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 46.0 | 3.72e-01 | 100.0% | 68.1% |
| 3899341 | 12.5.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS | 0.51 | 43.0 | 3.27e-01 | 94.4% | 51.8% |
| 3624162 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.51 | 41.0 | 2.81e-01 | 90.1% | 26.8% |