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NC_019504.1__YP_007004697.1__F411_gp47__00047
Bact-VirNC_019504.1__YP_007004697.1__F411_gp47__00047
Identity
- Accession:
- NC_019504 ↗
- Kingdom:
- phage
Quality
86.4
mean pLDDT
Taxonomy
TaxID: 1051676
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-69
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.80 | 52.0 | 5.41e-01 | 97.0% | 70.3% |
| 1bhaA00 | 1.10.287.170 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.79 | 48.0 | 4.90e-01 | 80.6% | 62.7% |
| 2bg1A01 | 3.90.1310.40 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › | 0.77 | 56.0 | 5.33e-01 | 85.1% | 66.2% |
| 3teqB00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.77 | 58.0 | 5.04e-01 | 91.0% | 53.5% |
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.76 | 54.0 | 4.87e-01 | 79.1% | 56.3% |
| 2ktmA00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.75 | 54.0 | 5.39e-01 | 76.1% | 75.0% |
| 4fwvA02 | 1.20.120.1680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.73 | 60.0 | 4.86e-01 | 97.0% | 46.3% |
| 2uuzB00 | 1.10.10.2020 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Host-nuclease inhibitor protein Gam | 0.73 | 63.0 | 5.81e-01 | 95.5% | 97.6% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.72 | 46.0 | 4.49e-01 | 83.6% | 60.3% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.72 | 50.0 | 5.05e-01 | 77.6% | 72.1% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.71 | 45.0 | 4.49e-01 | 88.1% | 62.0% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 46.0 | 4.90e-01 | 100.0% | 76.3% |
| 1kfdA02 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.70 | 41.0 | 4.05e-01 | 86.6% | 54.9% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.68 | 46.0 | 4.61e-01 | 86.6% | 68.7% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 47.0 | 5.02e-01 | 86.6% | 82.8% |
| 1v4aA01 | 1.10.4050.10 | Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE | 0.68 | 42.0 | 3.57e-01 | 70.1% | 38.5% |
| 3pfyA02 | 6.10.20.180 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › | 0.67 | 41.0 | 4.41e-01 | 74.6% | 71.9% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.67 | 45.0 | 4.33e-01 | 70.1% | 64.1% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 48.0 | 4.69e-01 | 74.6% | 70.4% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 45.0 | 4.63e-01 | 97.0% | 72.3% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.66 | 52.0 | 4.75e-01 | 85.1% | 65.1% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.65 | 52.0 | 4.96e-01 | 91.0% | 74.0% |
| 1jb0F00 | 1.10.8.110 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Photosystem I, reaction centre, subunit PsaF | 0.65 | 57.0 | 4.49e-01 | 100.0% | 58.2% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.65 | 45.0 | 4.67e-01 | 83.6% | 76.6% |
| 1sg7A00 | 1.10.1740.70 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB | 0.64 | 47.0 | 4.56e-01 | 79.1% | 82.7% |
| 3vayA02 | 1.20.120.1600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.64 | 45.0 | 4.16e-01 | 77.6% | 57.5% |
| 2lm9A00 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 45.0 | 4.00e-01 | 77.6% | 52.1% |
| 5svlA01 | 1.10.287.940 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel | 0.62 | 48.0 | 4.78e-01 | 83.6% | 100.0% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.61 | 46.0 | 4.31e-01 | 83.6% | 65.9% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 40.0 | 3.59e-01 | 80.6% | 48.0% |
| 3mhsB00 | 1.10.246.140 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 | 0.59 | 45.0 | 4.23e-01 | 89.6% | 68.1% |
| 4dhxB00 | 1.10.246.140 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 | 0.57 | 46.0 | 4.26e-01 | 95.5% | 69.2% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.54 | 46.0 | 3.68e-01 | 94.0% | 66.4% |
| 4qgpB00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.54 | 38.0 | 3.28e-01 | 82.1% | 46.7% |
| 1m0wA03 | 1.10.1080.10 | Mainly Alpha › Orthogonal Bundle › Glutathione Synthetase; Chain A, domain 3 › Glutathione Synthetase; Chain A, domain 3 | 0.53 | 39.0 | 3.68e-01 | 79.1% | 85.9% |
| 2a5yB01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.52 | 36.0 | 3.15e-01 | 73.1% | 89.9% |
| 5gj7A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 47.0 | 3.54e-01 | 100.0% | 69.5% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3691750 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.79 | 53.0 | 3.95e-01 | 100.0% | 30.9% |
| 3795605 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.78 | 52.0 | 3.73e-01 | 85.1% | 25.6% |
| 1174242 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.77 | 54.0 | 5.67e-01 | 100.0% | 82.0% |
| 5060491 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.76 | 55.0 | 4.46e-01 | 85.1% | 42.5% |
| 4029754 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.75 | 64.0 | 5.99e-01 | 97.0% | 81.2% |
| 5078867 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.75 | 46.0 | 4.09e-01 | 71.6% | 46.7% |
| 4983608 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.74 | 55.0 | 5.66e-01 | 95.5% | 81.5% |
| 3844040 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.74 | 47.0 | 4.84e-01 | 83.6% | 67.7% |
| 3378753 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.73 | 49.0 | 4.01e-01 | 79.1% | 39.2% |
| 3473827 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.72 | 44.0 | 4.69e-01 | 71.6% | 70.0% |
| 4349607 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.71 | 55.0 | 4.54e-01 | 85.1% | 49.1% |
| 4006721 | 325.1.7.50 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › PF25876 | 0.70 | 53.0 | 4.92e-01 | 83.6% | 63.5% |
| 3593261 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 40.0 | 4.07e-01 | 100.0% | 58.5% |
| 5063535 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.69 | 55.0 | 5.14e-01 | 83.6% | 78.8% |
| 3947564 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.69 | 48.0 | 4.92e-01 | 100.0% | 73.8% |
| 4167208 | 604.15.1.0 ↗ | alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like | 0.69 | 37.0 | 3.93e-01 | 82.1% | 60.0% |
| 3211243 | 323.1.1.6 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf | 0.69 | 52.0 | 2.99e-01 | 83.6% | 8.3% |
| 3620978 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.68 | 54.0 | 3.41e-01 | 83.6% | 19.1% |
| 4937584 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.68 | 50.0 | 4.81e-01 | 85.1% | 69.3% |
| 4831662 | 5043.1.1.1 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › Htr2 | 0.66 | 50.0 | 5.05e-01 | 89.6% | 80.3% |
| 4848962 | 3016.1.1.5 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SHMT | 0.65 | 47.0 | 4.42e-01 | 91.0% | 62.5% |
| 1095885 | 6128.1.1.0 ↗ | 0.63 | 43.0 | 4.47e-01 | 80.6% | 76.2% | |
| 2075294 | 3712.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 | 0.62 | 41.0 | 3.65e-01 | 89.6% | 45.5% |
| 4646268 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.61 | 45.0 | 4.43e-01 | 77.6% | 74.3% |
| 3813335 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.58 | 43.0 | 3.88e-01 | 77.6% | 85.6% |
| 4967396 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.55 | 48.0 | 4.31e-01 | 98.5% | 91.6% |