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NC_019504.1__YP_007004701.1__F411_gp51__00051
Bact-VirNC_019504.1__YP_007004701.1__F411_gp51__00051
Identity
- Accession:
- NC_019504 ↗
- Kingdom:
- phage
Quality
83.9
mean pLDDT
Taxonomy
TaxID: 1051676
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-80
Domain cluster:
rep: OR050627.1__WIC41441.1__MA9V1_177__00177__D2-79
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ed8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.81 | 43.0 | 4.15e-01 | 100.0% | 47.7% |
| 3tu3B03 | 1.20.1050.100 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.76 | 53.0 | 4.03e-01 | 71.8% | 41.2% |
| 3s98A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.72 | 39.0 | 3.68e-01 | 100.0% | 43.2% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.72 | 42.0 | 4.49e-01 | 100.0% | 68.2% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.67 | 41.0 | 4.53e-01 | 100.0% | 77.8% |
| 2iylD01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.64 | 42.0 | 4.55e-01 | 71.8% | 81.5% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.64 | 43.0 | 4.43e-01 | 100.0% | 72.4% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.63 | 39.0 | 4.71e-01 | 100.0% | 98.0% |
| 6izcA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.62 | 44.0 | 3.06e-01 | 74.4% | 43.0% |
| 2wyqA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.61 | 49.0 | 4.94e-01 | 100.0% | 87.0% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.60 | 36.0 | 4.31e-01 | 100.0% | 95.9% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.60 | 44.0 | 3.95e-01 | 100.0% | 56.0% |
| 4ekuA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 48.0 | 4.28e-01 | 89.7% | 82.9% |
| 4me3A03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.60 | 39.0 | 4.50e-01 | 100.0% | 96.4% |
| 3au4A02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 49.0 | 4.59e-01 | 91.0% | 95.7% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.58 | 43.0 | 4.07e-01 | 100.0% | 66.3% |
| 2yz0A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.57 | 46.0 | 3.89e-01 | 92.3% | 58.7% |
| 7kz9A02 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.56 | 47.0 | 3.56e-01 | 96.2% | 100.0% |
| 2jqzA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.55 | 50.0 | 4.18e-01 | 100.0% | 99.2% |
| 6djwA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 44.0 | 4.58e-01 | 94.9% | 94.4% |
| 7ct1A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 46.0 | 4.52e-01 | 94.9% | 96.5% |
| 1r9fA01 | 3.30.390.180 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 | 0.53 | 38.0 | 3.51e-01 | 78.2% | 81.7% |
| 1wx9A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 42.0 | 4.12e-01 | 91.0% | 83.7% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.52 | 42.0 | 3.59e-01 | 92.3% | 83.6% |
| 3gd0A01 | 2.60.110.10 | Mainly Beta › Sandwich › Thaumatin › Thaumatin | 0.52 | 46.0 | 3.28e-01 | 100.0% | 95.6% |
| 2j3wC00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 42.0 | 3.58e-01 | 91.0% | 85.9% |
| 4r7rA00 | 3.30.1490.410 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 | 0.51 | 35.0 | 3.00e-01 | 100.0% | 45.1% |
| 1yk9A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.51 | 40.0 | 3.15e-01 | 88.5% | 64.7% |
| 2mv2A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.51 | 37.0 | 3.13e-01 | 80.8% | 81.1% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.51 | 40.0 | 3.56e-01 | 89.7% | 81.7% |
| 7eehA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.50 | 41.0 | 2.93e-01 | 91.0% | 75.9% |
| 4eq3A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 39.0 | 3.62e-01 | 88.5% | 95.4% |
| 3weeA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 39.0 | 3.10e-01 | 88.5% | 77.6% |
| 2qnuA00 | 3.40.1730.10 | Alpha Beta › 3-Layer(aba) Sandwich › pa0076 fold › pa0076 domain | 0.50 | 39.0 | 3.02e-01 | 91.0% | 61.6% |
| 2mvzA00 | 2.40.100.10 | Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like | 0.50 | 45.0 | 3.66e-01 | 100.0% | 97.9% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3540654 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.76 | 42.0 | 3.88e-01 | 100.0% | 43.0% |
| 3892161 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.72 | 41.0 | 3.41e-01 | 100.0% | 33.1% |
| 4997210 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.70 | 44.0 | 4.21e-01 | 100.0% | 55.6% |
| 3969578 | 3268.1.1.0 ↗ | a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase | 0.69 | 36.0 | 4.13e-01 | 100.0% | 69.1% |
| 3325330 | 3346.1.1.5 ↗ | a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › ODR4-like | 0.69 | 42.0 | 3.16e-01 | 97.4% | 24.6% |
| 4463006 | 3115.2.1.0 ↗ | a+b two layers › GP2-like › GP2 › GP2 | 0.67 | 39.0 | 4.70e-01 | 97.4% | 97.8% |
| 4995774 | 375.1.1.185 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 | 0.66 | 35.0 | 4.53e-01 | 96.2% | 100.0% |
| 4990637 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.65 | 45.0 | 4.41e-01 | 100.0% | 67.5% |
| 3494162 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 45.0 | 3.91e-01 | 100.0% | 49.6% |
| 3615237 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.64 | 44.0 | 2.88e-01 | 100.0% | 15.8% |
| 3216210 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.63 | 40.0 | 4.69e-01 | 98.7% | 100.0% |
| 5026915 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 39.0 | 4.59e-01 | 100.0% | 96.0% |
| 3880705 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.61 | 49.0 | 4.22e-01 | 87.2% | 96.8% |
| 3267246 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 39.0 | 3.66e-01 | 100.0% | 53.7% |
| 4983067 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.60 | 35.0 | 4.24e-01 | 100.0% | 92.0% |
| 4956150 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 36.0 | 4.19e-01 | 100.0% | 87.3% |
| 3235407 | 11.2.1.52 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_nem | 0.59 | 52.0 | 4.27e-01 | 98.7% | 97.9% |
| 3929359 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.59 | 50.0 | 4.59e-01 | 98.7% | 95.4% |
| 3585357 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.59 | 45.0 | 4.14e-01 | 100.0% | 63.0% |
| 2722354 | 7523.1.1.3 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 | 0.59 | 50.0 | 3.78e-01 | 100.0% | 100.0% |
| 3604593 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 38.0 | 4.29e-01 | 100.0% | 96.4% |
| 4618815 | 73.1.1.16 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › Dicty_REP | 0.57 | 51.0 | 4.43e-01 | 100.0% | 95.8% |
| 3500562 | 221.1.1.7 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX | 0.57 | 49.0 | 4.77e-01 | 93.6% | 87.1% |
| 3941016 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.57 | 47.0 | 3.92e-01 | 91.0% | 78.5% |
| 3496817 | 3369.1.1.1 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal | 0.57 | 51.0 | 4.02e-01 | 100.0% | 77.5% |
| 3404684 | 10.12.1.84 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom | 0.56 | 44.0 | 3.22e-01 | 100.0% | 31.4% |
| 3947017 | 7523.1.1.3 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 | 0.56 | 47.0 | 3.57e-01 | 100.0% | 99.1% |
| 3929391 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.56 | 48.0 | 4.37e-01 | 100.0% | 92.7% |
| 3373335 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.55 | 46.0 | 4.68e-01 | 91.0% | 98.7% |
| 4971848 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.55 | 36.0 | 2.56e-01 | 98.7% | 18.6% |
| 5045774 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.55 | 44.0 | 3.71e-01 | 100.0% | 50.7% |
| 3935404 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.54 | 44.0 | 4.29e-01 | 91.0% | 100.0% |
| 3932150 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.54 | 37.0 | 3.80e-01 | 100.0% | 73.3% |
| 1041203 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.53 | 45.0 | 3.10e-01 | 98.7% | 67.5% |
| 3897763 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 38.0 | 3.46e-01 | 76.9% | 84.5% |
| 3695272 | 221.1.1.93 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF2420 | 0.53 | 43.0 | 3.66e-01 | 91.0% | 83.7% |
| 3929515 | 382.1.1.21 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF28966 | 0.53 | 41.0 | 3.68e-01 | 100.0% | 61.0% |
| 4930766 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.53 | 42.0 | 3.62e-01 | 98.7% | 52.6% |
| 3928432 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.53 | 44.0 | 4.17e-01 | 100.0% | 88.0% |
| 4996589 | 3662.1.1.4 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC_bac | 0.52 | 45.0 | 3.96e-01 | 100.0% | 98.3% |
| 420847 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.52 | 37.0 | 3.25e-01 | 75.6% | 82.5% |
| 3395520 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.52 | 36.0 | 4.08e-01 | 100.0% | 95.0% |
| 3487303 | 10.12.1.97 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CNBH_CNNM2_C | 0.52 | 36.0 | 2.83e-01 | 73.1% | 41.2% |
| 3443843 | 109.4.1.1291 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif | 0.52 | 36.0 | 2.19e-01 | 74.4% | 11.3% |
| 5050481 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 39.0 | 3.38e-01 | 87.2% | 92.8% |
| 4567075 | 10.12.1.84 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom | 0.51 | 40.0 | 2.78e-01 | 87.2% | 50.5% |
| 4861390 | 2484.1.1.6 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N | 0.50 | 40.0 | 2.85e-01 | 91.0% | 51.7% |
| 3343923 | 109.4.1.1156 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif | 0.50 | 37.0 | 2.49e-01 | 78.2% | 84.2% |