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NC_019508.1__YP_007005347.1__F391_gp20__00020
Bact-VirNC_019508.1__YP_007005347.1__F391_gp20__00020
Identity
- Accession:
- NC_019508 ↗
- Kingdom:
- phage
Quality
74.0
mean pLDDT
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 53-139
Domain cluster:
rep: IMGVR_UViG_3300025326_000018-3300025326-Ga0209342_1000012721__D81-170
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10145.15 best | PhageMin_Tail | 41.7 | 1.70e-10 | 57.5% | 24.9% |
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7uzqK01 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.74 | 66.0 | 4.37e-01 | 100.0% | 30.3% |
| 7kypB01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.73 | 54.0 | 3.78e-01 | 78.2% | 53.8% |
| 7dkaA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.69 | 58.0 | 4.41e-01 | 90.8% | 63.6% |
| 2i53A01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.66 | 51.0 | 4.28e-01 | 81.6% | 56.6% |
| 6tmfI00 | 1.10.455.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 | 0.66 | 51.0 | 3.79e-01 | 81.6% | 49.5% |
| 2xzmG00 | 1.10.455.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 | 0.64 | 56.0 | 4.40e-01 | 100.0% | 86.5% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.61 | 50.0 | 4.59e-01 | 86.2% | 80.6% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.61 | 51.0 | 5.10e-01 | 93.1% | 97.7% |
| 3b9qA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.60 | 42.0 | 4.19e-01 | 74.7% | 70.8% |
| 3h4cA02 | 1.10.472.110 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.60 | 50.0 | 4.71e-01 | 94.3% | 91.8% |
| 2lyiA01 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.59 | 46.0 | 3.85e-01 | 82.8% | 84.5% |
| 3nufB00 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.59 | 48.0 | 4.44e-01 | 89.7% | 100.0% |
| 1tuaA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.58 | 42.0 | 4.02e-01 | 77.0% | 68.6% |
| 2k0nA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.58 | 42.0 | 4.27e-01 | 75.9% | 85.9% |
| 3m1tA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.58 | 51.0 | 3.66e-01 | 100.0% | 49.8% |
| 2ogiB00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.58 | 50.0 | 3.83e-01 | 93.1% | 75.6% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 50.0 | 4.36e-01 | 95.4% | 82.6% |
| 2n3eA01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.58 | 40.0 | 3.68e-01 | 71.3% | 97.4% |
| 1z6tA03 | 1.10.8.430 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Helical domain of apoptotic protease-activating factors | 0.58 | 47.0 | 4.90e-01 | 93.1% | 100.0% |
| 8hixR01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.57 | 42.0 | 2.94e-01 | 75.9% | 94.7% |
| 2k3oA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.57 | 42.0 | 3.75e-01 | 79.3% | 94.6% |
| 3mzvA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.57 | 45.0 | 3.20e-01 | 90.8% | 56.3% |
| 5zjgA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.56 | 47.0 | 4.41e-01 | 95.4% | 99.1% |
| 8hp8A01 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.55 | 45.0 | 3.85e-01 | 97.7% | 52.9% |
| 3tviA01 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.55 | 48.0 | 3.44e-01 | 100.0% | 45.2% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.54 | 38.0 | 3.70e-01 | 83.9% | 66.0% |
| 2np5D00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 42.0 | 3.44e-01 | 82.8% | 46.8% |
| 1tjoB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 39.0 | 3.13e-01 | 74.7% | 46.3% |
| 1un8A02 | 1.25.40.340 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DhaL domain | 0.54 | 43.0 | 3.39e-01 | 87.4% | 93.2% |
| 2ewfA02 | 1.20.1270.310 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.54 | 39.0 | 4.05e-01 | 77.0% | 91.4% |
| 2bl2A00 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.53 | 45.0 | 3.77e-01 | 96.6% | 73.7% |
| 4ghnA01 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.53 | 37.0 | 3.44e-01 | 72.4% | 57.7% |
| 2wb7A03 | 1.20.120.870 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain | 0.53 | 43.0 | 3.75e-01 | 90.8% | 87.5% |
| 3sqnA03 | 1.10.1790.30 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › | 0.52 | 38.0 | 3.52e-01 | 78.2% | 90.7% |
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 44.0 | 4.56e-01 | 92.0% | 100.0% |
| 2etdA00 | 1.20.1440.20 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain | 0.51 | 37.0 | 3.21e-01 | 75.9% | 52.5% |
| 2v0oB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.51 | 37.0 | 2.64e-01 | 77.0% | 75.6% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3941716 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.87 | 74.0 | 6.31e-01 | 89.7% | 60.8% |
| 3722992 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.70 | 53.0 | 5.75e-01 | 93.1% | 100.0% |
| 3724301 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.68 | 59.0 | 5.66e-01 | 96.6% | 94.0% |
| 3376375 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.66 | 49.0 | 5.06e-01 | 78.2% | 96.2% |
| 4018688 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.66 | 59.0 | 5.84e-01 | 98.9% | 98.9% |
| 4936966 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.66 | 50.0 | 5.40e-01 | 83.9% | 100.0% |
| 4022288 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 54.0 | 5.53e-01 | 96.6% | 95.3% |
| 4212319 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.64 | 51.0 | 5.14e-01 | 96.6% | 89.4% |
| 3590984 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.63 | 51.0 | 5.31e-01 | 89.7% | 100.0% |
| 4013940 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.62 | 50.0 | 4.66e-01 | 92.0% | 70.0% |
| 3420431 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.62 | 45.0 | 4.59e-01 | 75.9% | 87.1% |
| 3326378 | 148.1.3.1 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › NB-ARC | 0.62 | 49.0 | 4.36e-01 | 96.6% | 59.2% |
| 5070459 | 2485.1.1.67 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GILT | 0.61 | 51.0 | 4.06e-01 | 93.1% | 60.0% |
| 3454325 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 46.0 | 4.85e-01 | 95.4% | 96.0% |
| 5042372 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.60 | 41.0 | 3.85e-01 | 92.0% | 58.7% |
| 3435433 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.59 | 49.0 | 5.02e-01 | 93.1% | 100.0% |
| 3391293 | 101.1.10.13 ↗ | alpha arrays › HTH › HTH › Cyclin-like › DUF3452 | 0.59 | 50.0 | 4.53e-01 | 94.3% | 95.0% |
| 3694094 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.59 | 50.0 | 3.86e-01 | 100.0% | 71.4% |
| 5013034 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.59 | 40.0 | 3.97e-01 | 92.0% | 67.8% |
| 138716 | 131.1.1.7 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HDOD | 0.58 | 51.0 | 3.66e-01 | 100.0% | 49.8% |
| 5023625 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.58 | 40.0 | 3.84e-01 | 92.0% | 61.0% |
| 3465988 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.57 | 48.0 | 3.53e-01 | 97.7% | 94.7% |
| 4628431 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.57 | 48.0 | 4.22e-01 | 98.9% | 93.0% |
| 154055 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.57 | 48.0 | 3.76e-01 | 100.0% | 78.6% |
| 4067150 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.55 | 48.0 | 4.09e-01 | 96.6% | 60.0% |
| 4565659 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.55 | 47.0 | 3.79e-01 | 94.3% | 51.5% |
| 5053950 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.54 | 39.0 | 2.74e-01 | 74.7% | 33.1% |
| 3525462 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.54 | 42.0 | 3.92e-01 | 83.9% | 85.5% |
| 4257453 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.54 | 47.0 | 4.14e-01 | 95.4% | 69.6% |
| 3490387 | 101.1.10.12 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Spy1 | 0.53 | 43.0 | 3.76e-01 | 92.0% | 73.4% |
| 4190899 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.53 | 44.0 | 3.66e-01 | 96.6% | 78.8% |
| 3459019 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.53 | 39.0 | 3.58e-01 | 92.0% | 59.1% |
| 3603607 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.52 | 38.0 | 3.32e-01 | 75.9% | 63.1% |
| 3637872 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.52 | 42.0 | 3.17e-01 | 88.5% | 69.8% |
| 4020823 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 42.0 | 3.26e-01 | 89.7% | 46.8% |
| 3591103 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.52 | 47.0 | 3.36e-01 | 100.0% | 45.6% |
| 4251273 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.52 | 46.0 | 3.87e-01 | 100.0% | 58.0% |
| 4346052 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.52 | 44.0 | 3.79e-01 | 97.7% | 59.3% |
| 4945084 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.51 | 45.0 | 3.85e-01 | 100.0% | 60.7% |
| 4133573 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.51 | 44.0 | 3.73e-01 | 100.0% | 56.1% |
| 4312016 | 601.4.1.49 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › TMEM171 | 0.50 | 36.0 | 3.10e-01 | 75.9% | 57.2% |
| 4995939 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.50 | 38.0 | 3.64e-01 | 92.0% | 67.6% |
D2
medium
residues 140-225
Domain cluster:
rep: MK994522__QGH71189.1__X__00033__D194-260
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10145.15 best | PhageMin_Tail | 50.3 | 3.90e-13 | 96.5% | 40.3% |