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NC_019508.1__YP_007005376.1__F391_gp49__00049

Bact-Vir

NC_019508.1__YP_007005376.1__F391_gp49__00049

Identity

Accession:
NC_019508 ↗
Kingdom:
phage

Quality

83.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-71
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wzsB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.76 48.0 3.98e-01 71.9% 36.3%
5y27A00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.72 50.0 4.33e-01 71.9% 48.0%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.72 46.0 3.94e-01 100.0% 41.2%
1vt0k00 1.10.3230.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) 0.71 48.0 3.67e-01 84.4% 31.0%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 56.0 5.17e-01 96.9% 66.7%
1jfiB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.70 49.0 3.85e-01 73.4% 34.8%
2vk9A03 1.10.3730.30 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › 0.66 48.0 4.20e-01 78.1% 54.1%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 57.0 4.88e-01 98.4% 94.1%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 5.12e-01 100.0% 96.3%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.65 47.0 4.49e-01 76.6% 66.2%
2dodA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.64 48.0 4.55e-01 100.0% 67.1%
1nklA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.63 50.0 4.72e-01 90.6% 73.1%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 43.0 4.10e-01 100.0% 60.3%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.62 45.0 4.11e-01 90.6% 59.3%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.61 50.0 4.57e-01 95.3% 66.3%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.61 45.0 4.11e-01 76.6% 65.9%
4gmqA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.61 42.0 3.80e-01 73.4% 52.2%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 45.0 4.20e-01 81.2% 65.1%
2v9kA01 1.10.10.2050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 44.0 4.81e-01 78.1% 100.0%
7wboA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 52.0 3.82e-01 98.4% 41.1%
1t5jA00 1.10.4080.10 Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 0.60 51.0 3.29e-01 95.3% 85.0%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 51.0 4.04e-01 98.4% 90.1%
3htaC00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 50.0 3.69e-01 100.0% 33.3%
3k8pC01 1.20.58.1440 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 52.0 4.43e-01 98.4% 73.3%
2nq2A00 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.59 49.0 3.22e-01 96.9% 65.3%
2c2aA01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.59 45.0 4.02e-01 95.3% 57.8%
6ljaA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.59 42.0 2.63e-01 87.5% 13.6%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.59 49.0 3.56e-01 92.2% 93.3%
1zzpA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.58 44.0 3.73e-01 81.2% 91.7%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.58 46.0 4.17e-01 95.3% 64.7%
2of7A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 50.0 3.94e-01 98.4% 78.6%
1bmtA02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.58 48.0 3.66e-01 93.8% 39.9%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.57 44.0 4.27e-01 100.0% 77.5%
5jolA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 42.0 3.99e-01 84.4% 76.8%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 41.0 3.96e-01 93.8% 67.9%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.56 46.0 4.23e-01 90.6% 77.4%
2kj9A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.56 48.0 3.94e-01 96.9% 69.5%
3cx3B01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.55 49.0 3.62e-01 96.9% 90.9%
2vk9A04 1.10.274.80 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.54 42.0 3.65e-01 85.9% 54.8%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.54 47.0 4.18e-01 98.4% 79.8%
4e6hA00 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 48.0 2.80e-01 98.4% 13.0%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 45.0 4.30e-01 98.4% 91.0%
1yuzB01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 48.0 3.72e-01 100.0% 87.0%
1wfdA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.53 48.0 4.17e-01 98.4% 68.8%
3vwaA03 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 47.0 3.01e-01 98.4% 30.2%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.52 46.0 3.91e-01 100.0% 61.3%
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.51 42.0 3.75e-01 100.0% 75.0%
4ixjA02 3.30.1690.20 Alpha Beta › 2-Layer Sandwich › TcpA-like pilin › 0.51 40.0 3.21e-01 92.2% 46.9%
2d05A02 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.51 42.0 3.53e-01 92.2% 84.7%
4h03A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.51 39.0 2.72e-01 82.8% 97.5%
3cqcB01 1.20.58.1380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 44.0 3.94e-01 100.0% 70.0%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3837298 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.76 61.0 6.28e-01 100.0% 93.3%
4973692 182.1.3.0 alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.72 60.0 5.18e-01 96.9% 59.0%
3173265 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.72 61.0 5.31e-01 95.3% 94.0%
4381449 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 58.0 5.71e-01 96.9% 84.3%
3833695 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.71 49.0 4.33e-01 89.1% 49.5%
5035650 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.70 60.0 5.88e-01 100.0% 88.6%
4099504 604.17.1.0 alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.69 41.0 4.26e-01 92.2% 63.3%
3428573 101.21.1.0 alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit 0.69 50.0 5.03e-01 90.6% 76.9%
5039859 6035.1.1.0 alpha bundles › Primase helical domain › Primase helical domain › Primase helical domain 0.68 52.0 4.69e-01 89.1% 58.9%
4125982 101.1.2.40 alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3 0.67 52.0 3.73e-01 82.8% 36.1%
2526893 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.67 57.0 4.71e-01 96.9% 52.9%
3733801 5051.1.1.10 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.66 59.0 3.51e-01 100.0% 61.5%
3694245 5051.1.1.10 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.66 59.0 3.49e-01 100.0% 58.8%
4936146 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.66 51.0 5.39e-01 93.8% 100.0%
2825526 109.4.1.1300 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_16, TPR_19 0.66 41.0 3.89e-01 92.2% 53.2%
2097968 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.65 55.0 5.11e-01 95.3% 81.7%
3740089 1134.1.1.7 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 0.65 50.0 5.01e-01 100.0% 80.0%
3725961 5051.1.1.10 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.65 58.0 3.44e-01 100.0% 58.8%
3898536 198.1.1.3 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.65 51.0 4.62e-01 84.4% 63.5%
5017220 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 55.0 5.49e-01 98.4% 100.0%
4012164 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.65 49.0 4.96e-01 100.0% 80.0%
3262552 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.64 51.0 4.93e-01 95.3% 77.3%
4961846 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.64 58.0 4.17e-01 100.0% 36.6%
3413026 103.4.1.3 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Med15_N 0.64 50.0 4.88e-01 84.4% 77.1%
3236724 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 52.0 4.57e-01 96.9% 69.5%
4458458 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.63 47.0 3.14e-01 82.8% 39.6%
4025989 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.63 54.0 3.68e-01 100.0% 26.4%
3823250 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 55.0 3.94e-01 98.4% 34.9%
3849025 601.1.1.145 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › IQUB 0.62 46.0 3.83e-01 79.7% 77.4%
3455585 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.62 51.0 4.57e-01 100.0% 63.0%
3530765 192.29.1.203 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › IQUB 0.62 46.0 3.86e-01 81.2% 80.0%
3592976 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 43.0 2.77e-01 92.2% 16.8%
3892817 101.1.1.129 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.60 43.0 3.92e-01 100.0% 55.6%
3177558 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.58 51.0 4.41e-01 100.0% 92.4%
4183744 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.58 45.0 3.96e-01 98.4% 55.0%
3535212 101.1.1.65 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.58 48.0 4.42e-01 100.0% 70.0%
3538309 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.58 47.0 4.38e-01 87.5% 76.2%
3497588 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 44.0 4.43e-01 85.9% 92.3%
3473460 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 47.0 3.31e-01 100.0% 30.3%
3690687 622.1.1.0 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.56 51.0 4.84e-01 100.0% 90.7%
4024049 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.56 50.0 4.73e-01 96.9% 84.0%
3666817 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.55 48.0 4.34e-01 100.0% 70.6%
5054769 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.55 47.0 3.89e-01 92.2% 82.7%
3481373 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 47.0 3.06e-01 100.0% 22.3%
3724761 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.55 48.0 4.64e-01 98.4% 85.7%
3940349 109.26.1.12 alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › TPR_Nup160_C, TPR_NUP160_120_M 0.54 49.0 2.97e-01 98.4% 16.6%
3251268 601.7.1.16 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN_Swt1 0.53 48.0 3.56e-01 100.0% 86.9%
4003320 109.4.1.37 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BRO1 0.53 49.0 3.16e-01 100.0% 24.1%
5057380 109.7.1.0 alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.53 40.0 3.20e-01 89.1% 41.6%
4577904 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.51 45.0 4.20e-01 100.0% 77.5%