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NC_019512.1__YP_007005681.1__F419_gp20__00020
Bact-VirNC_019512.1__YP_007005681.1__F419_gp20__00020
Identity
- Accession:
- NC_019512 ↗
- Kingdom:
- phage
Quality
78.6
mean pLDDT
Taxonomy
TaxID: 1154995
Cluster
View cluster (51 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 27-120_435-446
Domain cluster:
rep: IMGVR_UViG_3300002484_001677-3300002484-JGI25129J35166_10014221__D22-121
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16510.13 best | P22_portal | 63.8 | 1.70e-17 | 90.6% | 15.6% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3097398 | 4038.1.1.6 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › P22_portal | 0.91 | 76.0 | 7.11e-01 | 85.8% | 73.4% |
| 3965414 | 4038.1.1.6 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › P22_portal | 0.87 | 82.0 | 5.21e-01 | 100.0% | 66.7% |
| 2794172 | 4038.1.1.6 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › P22_portal | 0.86 | 70.0 | 6.68e-01 | 85.8% | 75.2% |
| 3266479 | 859.1.1.4 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › ATG13 | 0.54 | 37.0 | 3.03e-01 | 71.7% | 58.9% |
D2
medium
residues 121-266
Domain cluster:
rep: KF356198.1__AGR48562.1__A4L_35__00035__D190-341
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16510.13 best | P22_portal | 63.3 | 2.40e-17 | 100.0% | 32.2% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5bw0F00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.58 | 29.0 | 3.67e-01 | 78.1% | 78.0% |
| 1a8dA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.55 | 43.0 | 3.89e-01 | 83.6% | 89.3% |
| 4r62A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 34.0 | 3.42e-01 | 82.9% | 61.1% |
| 3qz4A00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 41.0 | 3.16e-01 | 81.5% | 91.8% |
| 3loyA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 29.0 | 3.20e-01 | 80.1% | 67.5% |
| 2fp8B00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.51 | 39.0 | 3.04e-01 | 79.5% | 96.4% |
| 3ebwA01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 35.0 | 3.57e-01 | 80.8% | 73.2% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3963566 | 4056.1.1.5 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › P22_portal | 0.82 | 73.0 | 7.32e-01 | 93.2% | 98.0% |
| 4891117 | 4038.1.1.11 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › SU10_portal | 0.76 | 71.0 | 4.65e-01 | 100.0% | 42.1% |
| 2537708 | 4056.1.1.4 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con | 0.75 | 64.0 | 6.68e-01 | 97.3% | 98.5% |
| 3505182 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 29.0 | 3.72e-01 | 70.5% | 77.5% |
| 3239059 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.58 | 37.0 | 4.03e-01 | 71.2% | 75.8% |
| 3209099 | 511.1.1.0 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain | 0.56 | 41.0 | 4.02e-01 | 75.3% | 94.2% |
| 3260630 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.55 | 42.0 | 3.92e-01 | 80.1% | 84.4% |
| 4560358 | 222.1.1.17 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N | 0.54 | 40.0 | 4.07e-01 | 76.0% | 92.9% |
| 4016705 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.53 | 41.0 | 3.91e-01 | 80.1% | 81.8% |
| 4580140 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.53 | 27.0 | 3.43e-01 | 78.1% | 83.5% |
| 4511353 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.52 | 41.0 | 4.03e-01 | 80.8% | 83.9% |
| 3440964 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.52 | 42.0 | 3.27e-01 | 84.9% | 75.9% |
| 3185240 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.52 | 40.0 | 3.52e-01 | 81.5% | 81.7% |
| 3427602 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.52 | 42.0 | 3.27e-01 | 84.9% | 75.9% |
| 5052460 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.52 | 42.0 | 3.08e-01 | 83.6% | 94.5% |
| 142888 | 5.1.2.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 | 0.52 | 41.0 | 3.16e-01 | 81.5% | 91.8% |
| 4015564 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.52 | 41.0 | 3.21e-01 | 83.6% | 90.3% |
| 5055532 | 5.1.4.668 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_CGLA | 0.52 | 37.0 | 2.68e-01 | 73.3% | 85.3% |
| 3439915 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.51 | 41.0 | 3.26e-01 | 84.9% | 79.0% |
| 4261656 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.51 | 39.0 | 3.57e-01 | 80.8% | 73.5% |
| 3348533 | 10.1.1.4 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin | 0.51 | 36.0 | 3.35e-01 | 71.9% | 82.3% |
| 3794870 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.51 | 36.0 | 3.48e-01 | 70.5% | 86.3% |
| 5070134 | 5.1.4.43 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 | 0.51 | 41.0 | 3.02e-01 | 84.9% | 94.1% |
| 4016343 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.51 | 39.0 | 3.61e-01 | 80.8% | 76.8% |
| 5016360 | 5.1.5.231 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › SBBP | 0.50 | 40.0 | 2.93e-01 | 82.9% | 90.9% |
D3
medium
residues 267-351
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16510.13 best | P22_portal | 42.4 | 5.10e-11 | 100.0% | 14.8% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nvmB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.64 | 47.0 | 3.84e-01 | 77.6% | 69.5% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 54.0 | 4.93e-01 | 97.6% | 80.7% |
| 2wxwA02 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.58 | 48.0 | 3.59e-01 | 89.4% | 69.6% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5035395 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.64 | 54.0 | 4.23e-01 | 97.6% | 44.7% |
| 5046286 | 219.1.1.51 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 | 0.63 | 44.0 | 3.29e-01 | 72.9% | 70.2% |
| None | — | 0.61 | 35.0 | 2.58e-01 | 75.3% | 23.4% | |
| 3402664 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.61 | 53.0 | 3.49e-01 | 96.5% | 66.3% |
| 2709787 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.59 | 54.0 | 3.49e-01 | 100.0% | 47.8% |
| 4632151 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.59 | 51.0 | 3.36e-01 | 98.8% | 68.0% |
| 3703402 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.58 | 42.0 | 3.56e-01 | 76.5% | 92.4% |
| 3405995 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.58 | 50.0 | 3.28e-01 | 98.8% | 65.1% |
| 4012216 | 7528.1.1.0 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains | 0.57 | 41.0 | 3.48e-01 | 77.6% | 52.0% |
| 3671803 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.55 | 38.0 | 4.20e-01 | 72.9% | 92.3% |
| 3724762 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.54 | 39.0 | 2.61e-01 | 77.6% | 29.5% |
| 4989009 | 2484.1.1.331 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_III | 0.53 | 43.0 | 2.81e-01 | 91.8% | 70.9% |
| 3789109 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 38.0 | 3.15e-01 | 84.7% | 42.0% |
| 3804922 | 2485.1.1.3 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glutaredoxin | 0.51 | 35.0 | 3.45e-01 | 70.6% | 100.0% |
| 3352228 | 2003.1.5.21 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CMAS | 0.50 | 34.0 | 2.49e-01 | 89.4% | 23.3% |
| 3246304 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.50 | 35.0 | 2.68e-01 | 71.8% | 87.9% |
| 4945410 | 7577.1.1.67 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › GcvP2_C | 0.50 | 39.0 | 2.66e-01 | 85.9% | 60.0% |
D4
medium
residues 449-536
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16510.13 best | P22_portal | 47.2 | 1.80e-12 | 100.0% | 15.8% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gw4A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 41.0 | 3.36e-01 | 90.9% | 92.2% |