←Back to structures

NC_019514.1__YP_007005773.1__F410_gp037__00037

Bact-Vir

Identity

Accession:: NC_019514 ↗
Kingdom:: phage

Quality

70.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Waedenswilvirus› Erwinia_phage_vB_EamP-S6

TaxID: 1051675

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-61

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7kfuC02	1.20.120.920	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain	0.60	40.0	2.70e-01	70.4%	48.5%
6qlyA01	3.10.20.90	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1	0.56	39.0	3.38e-01	72.2%	84.3%
2yzkA00	3.40.50.2020	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.56	40.0	2.85e-01	77.8%	63.6%
2xguB00	1.10.375.10	Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein	0.54	43.0	3.43e-01	98.1%	82.8%
1p65A00	6.10.140.90	Special › Helix non-globular › Helix Hairpins ›	0.54	36.0	3.60e-01	70.4%	71.9%
3icyA00	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.52	36.0	2.75e-01	72.2%	53.4%
1zxeC02	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.50	42.0	3.01e-01	98.1%	60.2%
2mkyA00	3.30.70.1530	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041	0.50	32.0	3.16e-01	94.4%	58.6%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4093657	101.1.8.1 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase	0.74	49.0	3.71e-01	72.2%	28.1%
3470968	109.1.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C	0.66	45.0	3.01e-01	70.4%	50.2%
4970833	327.11.2.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I)	0.65	33.0	3.05e-01	100.0%	37.1%
3921782	207.1.1.22 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6	0.61	41.0	2.70e-01	70.4%	72.7%
3279119	4090.1.1.0 ↗	a+b two layers › BH3703-like › BH3703-like › BH3703-like	0.60	45.0	3.49e-01	83.3%	50.4%
3207903	136.1.1.3 ↗	alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › An_peroxidase	0.58	48.0	2.65e-01	96.3%	37.5%
5055281	7584.1.1.0 ↗	a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins	0.58	49.0	3.18e-01	100.0%	35.0%
4021257	2003.1.5.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases	0.57	38.0	2.46e-01	70.4%	83.6%
3285197	4090.1.1.0 ↗	a+b two layers › BH3703-like › BH3703-like › BH3703-like	0.54	41.0	3.17e-01	83.3%	49.6%
4026219	3866.1.1.0 ↗	extended segments › Mitochondrial 54S ribosomal protein L25 › Mitochondrial 54S ribosomal protein L25 › Mitochondrial 54S ribosomal protein L25	0.53	36.0	2.98e-01	72.2%	36.1%
5046881	328.8.1.0 ↗	a+b two layers › IF3-like › Schlafen 8 › Schlafen 8	0.52	42.0	3.46e-01	96.3%	47.3%
3928690	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	39.0	2.22e-01	92.6%	6.3%