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NC_019516.2__YP_007005996.1__F417_gp005__00005

Bact-Vir

NC_019516.2__YP_007005996.1__F417_gp005__00005

Identity

Accession:
NC_019516 ↗
Kingdom:
phage

Quality

82.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aurunvirus› Cyanophage_S-TIM5

TaxID: 1137745

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-66
PDB
Domain cluster: rep: IMGVR_UViG_3300006598_000411-3300006598-Ga0079098_10275872__D17-65
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y8fA00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.67 51.0 5.25e-01 83.6% 98.0%
1xa6A02 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.66 51.0 4.84e-01 87.3% 73.9%
2rowA01 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.64 51.0 4.76e-01 90.9% 88.7%
3eeaA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.64 53.0 3.79e-01 90.9% 46.4%
1nj1A03 3.30.110.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › C-terminal domain of ProRS 0.58 39.0 3.55e-01 85.5% 54.3%
3ga8A00 3.10.20.860 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 43.0 4.03e-01 81.8% 89.6%
2pgwA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 45.0 3.31e-01 89.1% 78.0%
3kosA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 38.0 3.13e-01 74.5% 58.3%
2ewlA00 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 38.0 3.85e-01 96.4% 73.2%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 41.0 3.05e-01 100.0% 32.8%
2v4jB02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.53 44.0 3.16e-01 100.0% 59.0%
3uxjA01 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.52 43.0 3.39e-01 92.7% 55.9%
6le1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 41.0 3.85e-01 89.1% 95.6%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3541495 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.86 64.0 6.76e-01 80.0% 89.6%
3910642 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.84 60.0 6.32e-01 76.4% 100.0%
3935895 377.9.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT 0.80 55.0 6.26e-01 70.9% 97.5%
3189999 376.1.2.44 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › Vfa1 0.75 53.0 5.60e-01 74.5% 96.0%
3869599 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.71 51.0 5.28e-01 76.4% 92.0%
3625637 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.70 52.0 5.44e-01 81.8% 98.0%
3229027 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.70 56.0 5.50e-01 89.1% 81.7%
4030046 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 53.0 5.05e-01 83.6% 72.3%
3894271 377.9.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT 0.69 58.0 6.10e-01 89.1% 100.0%
3367860 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.68 46.0 4.93e-01 70.9% 100.0%
3825317 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.67 47.0 4.84e-01 74.5% 100.0%
3559946 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.67 52.0 4.95e-01 87.3% 93.8%
3861853 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.66 53.0 4.99e-01 92.7% 82.9%
3505150 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.66 53.0 5.15e-01 89.1% 86.7%
3203599 3371.1.1.1 ↗ few secondary structure elements › Regulator of transcription protein Rtr1 › Regulator of transcription protein Rtr1 › Regulator of transcription protein Rtr1 › RPAP2_Rtr1 0.66 47.0 3.27e-01 76.4% 48.9%
3487738 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.66 51.0 5.30e-01 87.3% 100.0%
3259047 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.65 51.0 5.17e-01 87.3% 94.5%
3550389 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.65 50.0 5.04e-01 89.1% 87.3%
3736933 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.65 51.0 4.87e-01 89.1% 78.5%
3739712 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.64 44.0 3.32e-01 70.9% 87.7%
3815263 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.63 42.0 4.54e-01 70.9% 97.8%
3409951 223.2.1.20 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.62 43.0 3.13e-01 96.4% 26.9%
3819552 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.62 44.0 4.50e-01 78.2% 96.4%
3829244 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.62 45.0 4.33e-01 80.0% 92.3%
3807783 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.60 41.0 4.42e-01 70.9% 100.0%
5075397 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.57 42.0 3.21e-01 100.0% 34.4%
5044314 3203.1.1.0 ↗ a+b two layers › Putative oxidoreductase › Putative oxidoreductase › Putative oxidoreductase 0.54 40.0 3.44e-01 81.8% 87.8%
4986127 2484.1.1.80 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HypF_C 0.51 39.0 3.05e-01 83.6% 42.5%