←Back to structures

NC_019516.2__YP_007006015.1__F417_gp024__00024

Bact-Vir

NC_019516.2__YP_007006015.1__F417_gp024__00024

Identity

Accession:
NC_019516 ↗
Kingdom:
phage

Quality

82.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aurunvirus› Cyanophage_S-TIM5

TaxID: 1137745

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 62-153
PDB
Domain cluster: rep: ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00375__D233-318
D2 high residues 437-562
PDB
Domain cluster: rep: MN018232.1__QDH50655.1__X__00189__D210-318
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.85 72.0 7.56e-01 87.3% 99.1%
1rwhA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.74 40.0 4.24e-01 99.2% 58.8%
2oezA01 2.60.440.10 Mainly Beta › Sandwich › YacF-like › YacF-like domains 0.70 38.0 4.72e-01 85.7% 85.9%
4igbB02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 52.0 4.96e-01 100.0% 69.2%
6cl5A01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 49.0 5.30e-01 100.0% 93.1%
4hsqA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 49.0 4.68e-01 100.0% 68.8%
4kx7A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.65 45.0 3.78e-01 100.0% 41.1%
1yjdC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 49.0 5.06e-01 99.2% 85.6%
4dzgA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.63 50.0 5.24e-01 100.0% 92.0%
1hcfX00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 41.0 4.52e-01 88.9% 83.2%
4rsvA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 40.0 4.59e-01 87.3% 88.9%
2vm9A02 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 45.0 5.03e-01 87.3% 99.0%
3wmqA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 44.0 4.93e-01 94.4% 100.0%
4dxzA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.60 47.0 4.98e-01 100.0% 92.8%
2ccvA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 45.0 4.94e-01 87.3% 99.0%
3qt2A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 37.0 4.07e-01 96.0% 79.4%
1uynX00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.59 47.0 3.63e-01 84.9% 63.1%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 32.0 4.01e-01 77.0% 89.3%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 38.0 4.23e-01 88.9% 86.3%
8begA03 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 49.0 4.66e-01 100.0% 77.2%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 40.0 3.46e-01 70.6% 81.3%
2cwrA00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 41.0 4.54e-01 97.6% 95.9%
4gf4A00 2.40.160.180 Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB 0.58 43.0 3.23e-01 77.8% 33.8%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 30.0 3.78e-01 73.8% 85.1%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.57 44.0 4.59e-01 98.4% 88.0%
2pslA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.57 42.0 3.45e-01 75.4% 56.7%
2woyA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 51.0 4.75e-01 100.0% 78.5%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.56 42.0 3.05e-01 77.8% 38.7%
7altB01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 42.0 3.95e-01 78.6% 69.0%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 4.13e-01 96.0% 87.3%
1h4uA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.55 44.0 3.59e-01 87.3% 84.9%
6sk6A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 49.0 3.78e-01 97.6% 68.1%
5mw5A01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 40.0 3.84e-01 78.6% 72.8%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 31.0 3.43e-01 73.0% 69.5%
8a28A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 4.19e-01 86.5% 100.0%
7alkA01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 40.0 3.76e-01 78.6% 70.6%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 38.0 3.31e-01 72.2% 86.3%
5k0uB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.71e-01 92.9% 86.0%
2bpa200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 4.28e-01 100.0% 87.4%
3wirA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.53 47.0 3.79e-01 100.0% 87.5%
1yi9A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 4.08e-01 84.9% 78.1%
2c9jA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.52 41.0 3.56e-01 86.5% 94.8%
3ndzE00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 4.26e-01 99.2% 94.4%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 36.0 3.17e-01 70.6% 86.5%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 4.07e-01 84.1% 96.1%
5vxzA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.73e-01 92.9% 82.4%
2xomA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 44.0 4.27e-01 97.6% 98.6%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
441034 3386.1.1.4 ↗ beta sandwiches › gp9 C-terminal domain-like › gp9 C-terminal domain-related › gp9 C-terminal domain-related › T4_gp9_10_C 0.83 72.0 7.43e-01 96.0% 95.0%
5056154 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.75 48.0 4.44e-01 100.0% 51.6%
3604637 4182.1.1.3 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.69 49.0 5.13e-01 100.0% 80.0%
3401979 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.69 50.0 4.13e-01 100.0% 42.7%
3602447 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.69 45.0 4.10e-01 100.0% 49.4%
1070070 11.1.5.52 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sgo0707_N2 0.68 52.0 4.91e-01 100.0% 67.3%
3392702 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.68 49.0 4.06e-01 100.0% 43.3%
4605899 11.1.1.1032 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF2544 0.68 50.0 4.89e-01 76.2% 84.4%
3251054 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 52.0 4.88e-01 81.7% 75.5%
5017052 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.67 45.0 4.01e-01 100.0% 48.6%
5009953 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.66 49.0 4.18e-01 100.0% 47.8%
1714450 11.21.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.65 45.0 5.10e-01 87.3% 95.7%
4004645 3478.1.1.7 ↗ extended segments › Histidine kinase receptor ArcB membrane domain › Histidine kinase receptor ArcB membrane domain › Histidine kinase receptor ArcB membrane domain › DUF2207 0.65 47.0 3.94e-01 100.0% 44.7%
3918381 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.63 41.0 4.44e-01 88.9% 78.1%
150670 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 50.0 5.22e-01 100.0% 91.2%
2859191 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.63 48.0 4.16e-01 100.0% 53.4%
3269110 10.20.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.62 44.0 4.65e-01 98.4% 82.7%
3860289 11.1.1.297 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_2 0.62 50.0 4.66e-01 100.0% 69.0%
3277038 10.20.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.62 45.0 4.20e-01 92.1% 59.4%
3869023 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.62 48.0 4.03e-01 100.0% 47.9%
3923723 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.62 41.0 4.39e-01 86.5% 79.0%
4951146 71.1.1.8 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.62 43.0 3.58e-01 70.6% 86.2%
5013259 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 48.0 4.83e-01 87.3% 81.6%
1714453 11.21.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.60 43.0 4.80e-01 85.7% 97.9%
5058689 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 41.0 4.47e-01 100.0% 87.0%
4561898 11.1.1.535 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Peptidase_M26_N 0.60 41.0 3.92e-01 95.2% 60.4%
3620151 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 44.0 4.58e-01 100.0% 84.3%
3491160 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 45.0 4.31e-01 100.0% 69.3%
3270934 4182.1.1.2 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin 0.58 45.0 4.91e-01 94.4% 99.0%
1121 10.32.1.35 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › YpM 0.57 44.0 4.59e-01 98.4% 88.0%
3213707 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 45.0 4.84e-01 86.5% 96.4%
4295345 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.57 40.0 3.79e-01 100.0% 59.4%
4958640 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.57 40.0 3.61e-01 71.4% 98.3%
4929805 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 51.0 4.64e-01 100.0% 90.0%
1157836 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.57 41.0 3.79e-01 73.0% 71.8%
3581781 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.57 39.0 4.31e-01 88.1% 91.6%
3628597 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 45.0 4.22e-01 86.5% 75.6%
3580624 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 46.0 4.13e-01 89.7% 86.7%
3625197 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.56 46.0 4.20e-01 89.7% 91.8%
3485933 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.56 39.0 3.88e-01 75.4% 67.4%
3927098 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 42.0 4.44e-01 84.1% 90.9%
3417166 10.1.1.34 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF3472 0.55 44.0 3.74e-01 87.3% 73.3%
3988567 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 43.0 4.68e-01 85.7% 100.0%
4615735 10.32.1.274 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF27453 0.55 43.0 4.71e-01 84.1% 100.0%
2979144 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.55 46.0 4.31e-01 92.9% 95.5%
4962629 71.1.1.27 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF7537 0.54 37.0 3.13e-01 70.6% 90.9%
4468812 10.1.1.1 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.53 45.0 3.95e-01 93.7% 82.6%
4291120 10.21.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.53 47.0 4.64e-01 97.6% 92.6%
3699997 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 46.0 4.11e-01 97.6% 70.8%
5036836 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 44.0 3.55e-01 88.1% 87.8%
3971437 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.52 42.0 3.55e-01 86.5% 99.5%
3566092 10.21.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.52 46.0 4.44e-01 97.6% 92.1%
3598621 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 36.0 4.04e-01 83.3% 97.9%
3927107 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.51 42.0 4.23e-01 88.9% 89.6%
3493007 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 4.15e-01 96.0% 91.6%
3978064 304.51.1.3 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_assoc 0.51 30.0 3.54e-01 73.8% 88.7%
4512746 5084.1.1.9 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagL 0.50 45.0 4.23e-01 98.4% 100.0%