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NC_019516.2__YP_007006019.1__F417_gp209__00028
Bact-VirNC_019516.2__YP_007006019.1__F417_gp209__00028
Identity
- Accession:
- NC_019516 ↗
- Kingdom:
- phage
Quality
97.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-73
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qvwA04 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.69 | 53.0 | 4.23e-01 | 83.6% | 63.4% |
| 2w9zA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.66 | 47.0 | 3.84e-01 | 74.0% | 63.9% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.66 | 48.0 | 4.71e-01 | 84.9% | 70.4% |
| 2mabA00 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.63 | 43.0 | 3.80e-01 | 71.2% | 47.7% |
| 3hzjA03 | 1.10.472.80 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 | 0.62 | 53.0 | 4.33e-01 | 100.0% | 55.7% |
| 5dvwA00 | 1.20.120.1160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.61 | 46.0 | 3.83e-01 | 82.2% | 65.9% |
| 5bn3A04 | 1.10.1140.10 | Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 | 0.60 | 48.0 | 3.96e-01 | 89.0% | 55.4% |
| 1o2dA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.59 | 45.0 | 3.43e-01 | 83.6% | 58.7% |
| 1f16A00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.57 | 44.0 | 3.36e-01 | 86.3% | 82.3% |
| 3vayA02 | 1.20.120.1600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.56 | 40.0 | 3.89e-01 | 86.3% | 66.7% |
| 1v66A00 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.54 | 41.0 | 4.29e-01 | 83.6% | 100.0% |
| 6ygiB01 | 1.10.4090.10 | Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus | 0.54 | 43.0 | 3.50e-01 | 89.0% | 89.7% |
| 3owaB04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 40.0 | 3.20e-01 | 80.8% | 75.2% |
| 1vmgA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.54 | 37.0 | 3.63e-01 | 72.6% | 68.3% |
| 2isyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 43.0 | 3.57e-01 | 95.9% | 81.9% |
| 5zr4A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 43.0 | 3.93e-01 | 98.6% | 80.4% |
| 5cbgA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 36.0 | 3.30e-01 | 76.7% | 75.5% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3376375 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.75 | 62.0 | 6.09e-01 | 91.8% | 85.0% |
| 3684774 | 103.4.1.13 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF28365 | 0.72 | 62.0 | 5.85e-01 | 97.3% | 87.8% |
| 4259065 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.71 | 55.0 | 5.53e-01 | 83.6% | 84.0% |
| 4931444 | 2488.1.1.1 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase | 0.68 | 60.0 | 4.19e-01 | 97.3% | 70.0% |
| 3940867 | 632.22.1.67 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › DUF842 | 0.68 | 49.0 | 4.52e-01 | 76.7% | 87.4% |
| 3973355 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.67 | 52.0 | 5.02e-01 | 87.7% | 74.1% |
| 3593195 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.64 | 50.0 | 4.79e-01 | 83.6% | 97.6% |
| None | — | 0.64 | 46.0 | 3.33e-01 | 76.7% | 27.5% | |
| 3492902 | 524.1.1.1 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC | 0.63 | 54.0 | 4.41e-01 | 100.0% | 55.7% |
| 3182867 | 2006.1.4.33 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Tim17 | 0.63 | 43.0 | 4.22e-01 | 71.2% | 82.5% |
| 3196945 | 524.1.1.0 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p | 0.63 | 54.0 | 4.14e-01 | 100.0% | 48.3% |
| 3784459 | 148.1.3.206 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF31015 | 0.62 | 48.0 | 4.38e-01 | 84.9% | 92.9% |
| 3756948 | 601.19.1.17 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Niban2 | 0.61 | 45.0 | 3.52e-01 | 79.5% | 77.6% |
| 4026916 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.61 | 45.0 | 3.74e-01 | 80.8% | 68.6% |
| 3993596 | 524.1.1.1 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC | 0.60 | 50.0 | 4.25e-01 | 100.0% | 63.7% |
| 4332277 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.59 | 41.0 | 3.52e-01 | 74.0% | 56.0% |
| 3597591 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.57 | 43.0 | 4.39e-01 | 83.6% | 91.4% |
| 3927235 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.57 | 45.0 | 4.63e-01 | 87.7% | 95.7% |
| 2581423 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.56 | 42.0 | 4.14e-01 | 82.2% | 80.2% |
| 3709299 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 41.0 | 2.63e-01 | 80.8% | 67.6% |
| 1883344 | 604.39.1.4 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ABC_cobalt | 0.55 | 42.0 | 3.20e-01 | 84.9% | 60.9% |
| 4211751 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.55 | 39.0 | 3.29e-01 | 74.0% | 56.0% |
| 5012052 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.53 | 45.0 | 3.78e-01 | 97.3% | 86.9% |
| 5001480 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.53 | 45.0 | 3.69e-01 | 95.9% | 81.4% |
| 3193601 | 524.1.1.1 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC | 0.53 | 44.0 | 3.53e-01 | 100.0% | 50.6% |
| None | — | 0.53 | 45.0 | 3.72e-01 | 97.3% | 84.4% | |
| 3603679 | 183.1.1.0 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain | 0.53 | 44.0 | 3.79e-01 | 94.5% | 92.5% |
| 3291136 | 183.1.1.0 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain | 0.52 | 43.0 | 3.52e-01 | 97.3% | 76.7% |