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NC_019516.2__YP_007006050.1__F417_gp176__00061

Bact-Vir

Identity

Accession:: NC_019516 ↗
Kingdom:: phage

Quality

88.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aurunvirus› Cyanophage_S-TIM5

TaxID: 1137745

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-75

PDB

Domain cluster: representative

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4jndA01	1.10.1740.220	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A ›	0.74	58.0	4.70e-01	84.3%	66.2%
2g8lB01	1.10.8.380	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1	0.74	52.0	5.37e-01	74.3%	92.5%
3cxbA03	1.10.1740.30	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain	0.73	54.0	5.21e-01	80.0%	92.6%
3ibyD02	1.10.287.1770	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.72	47.0	4.44e-01	74.3%	56.0%
3kp1E02	1.10.8.1000	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ornithine 4,5 aminomutase S component, alpha subunit-like	0.71	49.0	5.00e-01	72.9%	90.0%
4mk6A00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.69	55.0	4.01e-01	87.1%	44.7%
1rfmA01	1.10.1530.10	Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel	0.68	49.0	3.99e-01	77.1%	47.7%
6wb4B01	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.65	48.0	3.11e-01	78.6%	28.9%
1bgvA03	1.10.285.10	Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Glutamate Dehydrogenase, chain A, domain 3	0.62	45.0	4.47e-01	84.3%	72.4%
5xnyA01	1.10.275.10	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain)	0.62	45.0	4.06e-01	81.4%	72.9%
2ddmB00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.59	51.0	3.44e-01	97.1%	64.9%
6ks6B02	3.30.260.10	Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain	0.57	44.0	3.69e-01	84.3%	76.2%
2igsA00	1.10.3690.10	Mainly Alpha › Orthogonal Bundle › PA2222-like fold › PA2222-like domain	0.56	43.0	3.10e-01	84.3%	44.9%
2oauA01	1.10.287.1260	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	43.0	3.82e-01	91.4%	80.4%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3759757	181.1.1.0 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins	0.70	55.0	4.79e-01	84.3%	81.9%
3700826	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.70	53.0	5.39e-01	81.4%	100.0%
3581236	160.1.1.0 ↗	alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase	0.70	57.0	4.19e-01	90.0%	36.8%
4068539	602.1.1.1 ↗	alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1	0.67	50.0	3.21e-01	80.0%	43.0%
3929290	614.1.1.0 ↗	alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain	0.65	47.0	4.75e-01	77.1%	98.6%
3926812	397.7.1.0 ↗	few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1	0.63	46.0	4.63e-01	77.1%	97.1%
3934162	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.55	37.0	3.32e-01	70.0%	92.4%