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NC_019516.2__YP_007006061.1__F417_gp165__00072

Bact-Vir

NC_019516.2__YP_007006061.1__F417_gp165__00072

Identity

Accession:
NC_019516 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aurunvirus› Cyanophage_S-TIM5

TaxID: 1137745

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-156
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.73 63.0 5.45e-01 100.0% 61.4%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.73 55.0 5.92e-01 100.0% 92.5%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.72 68.0 6.61e-01 100.0% 91.1%
1p4tA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.72 66.0 6.13e-01 100.0% 91.0%
2q03A00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.71 62.0 6.09e-01 92.7% 90.2%
2ervA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.71 66.0 6.13e-01 100.0% 95.3%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.71 58.0 6.04e-01 99.2% 93.8%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.68 58.0 5.70e-01 100.0% 85.0%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 61.0 5.57e-01 98.4% 88.2%
4c00A04 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.67 50.0 3.67e-01 78.0% 86.3%
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.66 60.0 4.74e-01 98.4% 96.4%
3ia8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 59.0 5.36e-01 100.0% 85.2%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.63 44.0 4.21e-01 71.5% 93.8%
4boeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 51.0 4.77e-01 99.2% 69.5%
2htaA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 47.0 3.53e-01 78.0% 94.3%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.61 55.0 4.44e-01 100.0% 90.9%
2o4vA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.61 56.0 3.86e-01 100.0% 91.0%
1a0sP00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.61 54.0 3.76e-01 98.4% 97.8%
1bt9A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.60 47.0 3.48e-01 82.9% 41.2%
1af6A00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.60 56.0 3.81e-01 100.0% 97.9%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 55.0 4.71e-01 99.2% 73.2%
1fw3A00 2.40.230.10 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 0.60 55.0 4.31e-01 100.0% 89.2%
4afkA00 2.40.160.100 Mainly Beta › Beta Barrel › Porin › 0.60 52.0 3.62e-01 96.7% 96.7%
2cy9B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 45.0 4.47e-01 79.7% 100.0%
3os7A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 45.0 3.33e-01 81.3% 95.0%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.58 44.0 3.85e-01 80.5% 82.9%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 44.0 4.39e-01 87.8% 76.4%
2fs2B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 44.0 4.27e-01 80.5% 92.8%
4c4vB02 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.58 50.0 3.60e-01 95.9% 97.6%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.57 45.0 3.60e-01 82.9% 61.1%
4k3bA06 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.57 51.0 3.68e-01 100.0% 97.0%
3u0aA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.57 46.0 3.60e-01 85.4% 89.8%
1em2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 50.0 4.16e-01 97.6% 80.8%
1q4tA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 44.0 4.21e-01 82.9% 96.5%
2f1cX00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.56 48.0 3.83e-01 95.1% 93.3%
7dd9A02 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.55 42.0 3.36e-01 80.5% 91.8%
5dl8A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.55 48.0 3.40e-01 95.9% 94.9%
3nwzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 39.0 3.69e-01 74.8% 80.1%
4kc5C03 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.54 46.0 3.45e-01 91.1% 79.9%
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 47.0 4.23e-01 96.7% 91.9%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 49.0 4.50e-01 100.0% 91.1%
7btxA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.53 47.0 3.43e-01 97.6% 90.6%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.53 47.0 3.93e-01 98.4% 71.9%
3blcA00 2.70.98.90 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 40.0 3.14e-01 82.1% 86.8%
3v89A02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.52 46.0 2.94e-01 96.7% 97.8%
3efmA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.51 46.0 3.14e-01 98.4% 97.9%
6secA03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 42.0 3.25e-01 91.9% 84.2%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018057 9.13.1.0 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.74 62.0 6.25e-01 87.8% 100.0%
3385673 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.73 68.0 6.17e-01 100.0% 88.7%
3748074 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.72 56.0 5.09e-01 100.0% 62.5%
3734732 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.67 60.0 5.12e-01 96.7% 88.1%
4152335 9.2.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.66 55.0 5.53e-01 98.4% 87.9%
3611705 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.64 53.0 3.78e-01 89.4% 80.0%
3975988 5084.3.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.64 54.0 4.17e-01 89.4% 76.2%
3306745 883.1.1.22 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › PF26547 0.63 48.0 4.12e-01 80.5% 89.9%
3971437 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.63 56.0 4.58e-01 95.9% 92.7%
4662377 5084.5.4.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.62 53.0 4.00e-01 91.9% 100.0%
4339571 5084.5.4.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein 0.62 50.0 3.43e-01 86.2% 56.8%
3594654 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.62 56.0 3.97e-01 99.2% 96.5%
3941401 5084.5.2.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.60 56.0 3.87e-01 100.0% 93.9%
3976425 5084.5.1.8 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.59 54.0 4.49e-01 99.2% 96.2%
3965241 5084.5.4.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.59 51.0 3.82e-01 93.5% 99.0%
4425267 5084.5.1.6 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprB 0.59 48.0 3.35e-01 87.8% 37.3%
3964794 5084.5.4.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.59 46.0 3.69e-01 82.9% 100.0%
3965708 5084.5.4.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.58 45.0 3.64e-01 81.3% 49.6%
3293131 5084.5.1.3 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.58 47.0 3.70e-01 85.4% 56.7%
3824904 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.58 52.0 3.80e-01 99.2% 97.6%
3429047 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.57 51.0 3.87e-01 99.2% 97.7%
4319395 5084.5.1.11 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.57 52.0 3.72e-01 99.2% 92.3%
3574877 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.56 38.0 2.89e-01 78.0% 27.7%
3512269 79.1.1.16 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › DUF1983 0.56 34.0 3.90e-01 73.2% 82.2%
4652295 5084.5.1.52 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › SlpA_C 0.56 42.0 2.67e-01 78.9% 18.3%
890 5084.5.1.11 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.56 51.0 3.70e-01 100.0% 97.0%
3942050 5084.5.2.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.55 46.0 3.45e-01 90.2% 61.6%
5061892 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.55 42.0 3.41e-01 81.3% 66.9%
5009761 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.55 49.0 4.64e-01 97.6% 97.2%
3959921 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 35.0 4.09e-01 87.0% 98.7%
3426868 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.54 46.0 4.11e-01 95.1% 86.1%
4655696 5084.10.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.54 41.0 2.69e-01 79.7% 32.8%
2491331 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 48.0 4.39e-01 100.0% 84.8%
3003431 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.53 49.0 4.47e-01 98.4% 97.5%
5051273 12.3.1.14 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III 0.53 40.0 3.18e-01 78.9% 96.4%
4025179 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 45.0 3.88e-01 97.6% 87.8%
4527549 5084.5.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 0.52 45.0 3.30e-01 95.9% 86.4%
3198474 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.51 34.0 3.40e-01 72.4% 63.1%
3979477 5084.8.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.50 44.0 3.00e-01 96.7% 93.4%