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NC_019516.2__YP_007006070.1__F417_gp155__00082

Bact-Vir

NC_019516.2__YP_007006070.1__F417_gp155__00082

Identity

Accession:
NC_019516 ↗
Kingdom:
phage

Quality

73.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aurunvirus› Cyanophage_S-TIM5

TaxID: 1137745

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 73-103
PDB
Domain cluster: rep: IMGVR_UViG_3300033144_008177-3300033144-Ga0366838_10004052__D297-326
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 3.67e-01 71.0% 58.8%
2ghfA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.62 45.0 3.44e-01 87.1% 55.1%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.62 46.0 3.47e-01 90.3% 80.0%
3s40A01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.61 46.0 3.24e-01 100.0% 97.7%
2v5oA05 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.60 47.0 3.23e-01 100.0% 66.4%
4jdmB01 6.20.30.10 Special › Other non-globular › Pemi-like Protein 1; Chain: D › 0.60 42.0 4.02e-01 100.0% 59.1%
1nqlB00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.60 41.0 3.80e-01 100.0% 52.1%
5efrA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.58 42.0 3.38e-01 83.9% 97.3%
2iz4A02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 42.0 3.96e-01 87.1% 61.9%
3og5A01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.56 41.0 3.28e-01 90.3% 87.1%
6rwcA02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 40.0 3.86e-01 83.9% 66.7%
3rh7A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 40.0 2.93e-01 100.0% 57.4%
2xocA01 3.30.40.140 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.54 39.0 3.26e-01 100.0% 52.6%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 39.0 2.33e-01 93.5% 22.5%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 41.0 2.82e-01 100.0% 45.2%
2m85A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 36.0 3.16e-01 87.1% 44.6%
4bzaA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.53 38.0 3.04e-01 87.1% 88.5%
4kyxA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 36.0 2.59e-01 90.3% 60.4%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.52 36.0 3.02e-01 90.3% 89.0%
7lhgC01 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.52 35.0 2.72e-01 87.1% 85.3%
5c68A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 35.0 2.73e-01 96.8% 91.7%
3lo7A01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.51 40.0 2.74e-01 93.5% 27.6%
5xfoA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 35.0 3.25e-01 90.3% 57.1%
1twfB05 3.90.1070.20 Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › 0.50 35.0 2.93e-01 100.0% 85.4%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3483120 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.66 53.0 4.27e-01 93.5% 98.5%
3483119 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.63 53.0 4.91e-01 96.8% 92.5%
4416753 2498.1.1.59 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_U49 0.63 50.0 2.99e-01 100.0% 17.5%
4032431 50.1.1.3 ↗ beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 0.63 48.0 3.19e-01 96.8% 66.5%
3397117 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.62 45.0 3.78e-01 90.3% 52.3%
3499939 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.62 51.0 3.25e-01 100.0% 29.3%
3237389 387.1.5.24 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Lustrin_cystein 0.61 43.0 4.11e-01 77.4% 67.5%
3219584 387.1.5.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.60 43.0 3.85e-01 80.6% 75.0%
3629517 11.2.1.57 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF28126 0.60 47.0 2.88e-01 96.8% 17.4%
3929491 387.1.7.1 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold › Lustrin_cystein 0.60 42.0 3.86e-01 77.4% 71.1%
4537352 2498.1.1.29 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 0.59 44.0 2.94e-01 100.0% 20.6%
3929788 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.59 43.0 3.29e-01 100.0% 26.2%
3213517 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.58 42.0 2.64e-01 93.5% 34.8%
3239938 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.57 40.0 2.36e-01 87.1% 8.1%
4183108 304.47.1.1 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.56 44.0 2.84e-01 100.0% 47.8%
3968808 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 41.0 2.95e-01 96.8% 33.1%
3233965 59.1.1.9 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › EAF 0.55 38.0 2.81e-01 87.1% 75.8%
4955368 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 38.0 2.78e-01 77.4% 24.0%
3521873 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.55 41.0 3.26e-01 90.3% 35.0%
3975395 4212.1.1.1 ↗ beta barrels › FimD N-terminal domain-like › FimD N-terminal domain-like › FimD N-terminal domain-like › PapC_N 0.55 40.0 2.84e-01 87.1% 65.6%
3250496 388.1.1.0 ↗ few secondary structure elements › Huristasin-like › Huristasin-like › Huristasin-like 0.54 39.0 3.85e-01 87.1% 71.4%
4484863 59.1.3.7 ↗ beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › EAF 0.54 37.0 2.95e-01 90.3% 88.4%
4937778 4961.1.1.1 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 0.54 38.0 3.46e-01 87.1% 90.9%
4661360 59.1.1.9 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › EAF 0.54 37.0 2.77e-01 87.1% 88.7%
5011605 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.54 37.0 2.50e-01 96.8% 17.2%
3704465 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 37.0 2.37e-01 87.1% 20.0%
4956726 4961.1.1.1 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 0.53 38.0 3.12e-01 100.0% 80.0%
3928687 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 37.0 2.27e-01 87.1% 9.3%
3612780 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.52 41.0 2.69e-01 93.5% 29.6%
3939832 2006.1.6.39 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Mat89Bb 0.52 36.0 2.31e-01 100.0% 87.3%
4028067 306.4.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.51 36.0 2.77e-01 93.5% 27.0%
5054592 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.51 40.0 2.95e-01 100.0% 32.7%
1 1.1.1.3 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP 0.50 35.0 2.26e-01 74.2% 12.3%
3512515 247.1.1.45 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, RMMBL, Lactamase_B_2 0.50 35.0 2.15e-01 100.0% 13.5%
3485409 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.50 38.0 3.63e-01 100.0% 72.5%
4004344 4212.1.1.1 ↗ beta barrels › FimD N-terminal domain-like › FimD N-terminal domain-like › FimD N-terminal domain-like › PapC_N 0.50 34.0 2.73e-01 87.1% 77.8%