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NC_019516.2__YP_007006073.1__F417_gp152__00085
Bact-VirNC_019516.2__YP_007006073.1__F417_gp152__00085
Identity
- Accession:
- NC_019516 ↗
- Kingdom:
- phage
Quality
74.5
mean pLDDT
Cluster
View cluster (116 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-100
D2
medium
residues 101-166
Domain cluster:
rep: OM681334.1__UNJ22046.1__X__00006__D51-106
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.77 | 71.0 | 6.24e-01 | 100.0% | 100.0% |
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.76 | 68.0 | 6.01e-01 | 100.0% | 94.7% |
| 1hpgA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.70 | 46.0 | 4.00e-01 | 90.9% | 45.5% |
| 3gqhA01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.67 | 62.0 | 4.95e-01 | 100.0% | 80.5% |
| 1v5vA03 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.66 | 46.0 | 4.48e-01 | 92.4% | 65.3% |
| 1uz5A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.66 | 56.0 | 5.45e-01 | 95.5% | 97.2% |
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.63 | 40.0 | 3.61e-01 | 93.9% | 46.7% |
| 6y2kA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.58 | 36.0 | 3.96e-01 | 95.5% | 80.0% |
| 2kbsA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.58 | 50.0 | 4.53e-01 | 100.0% | 100.0% |
| 1vloA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.58 | 43.0 | 3.88e-01 | 92.4% | 58.2% |
| 1si5H01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 44.0 | 3.70e-01 | 95.5% | 47.9% |
| 1wu2A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.56 | 45.0 | 4.36e-01 | 92.4% | 92.2% |
| 1v9kA00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.56 | 44.0 | 3.02e-01 | 92.4% | 24.7% |
| 1x31A02 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.56 | 45.0 | 2.79e-01 | 93.9% | 14.8% |
| 1fx0B01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.52 | 38.0 | 3.66e-01 | 90.9% | 67.1% |
| 4epcA02 | 2.30.30.170 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 34.0 | 3.33e-01 | 100.0% | 63.4% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5083817 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.86 | 72.0 | 7.33e-01 | 89.4% | 100.0% |
| 5002645 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.84 | 71.0 | 7.47e-01 | 92.4% | 100.0% |
| 2559744 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.80 | 66.0 | 6.94e-01 | 100.0% | 98.3% |
| 2640772 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.76 | 71.0 | 6.05e-01 | 100.0% | 92.0% |
| 3945288 | 70.4.1.7 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid | 0.74 | 67.0 | 5.15e-01 | 100.0% | 83.3% |
| 2808420 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.74 | 66.0 | 5.57e-01 | 100.0% | 83.5% |
| 5083816 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.73 | 64.0 | 6.31e-01 | 95.5% | 97.1% |
| 3513462 | 70.4.1.8 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement | 0.71 | 58.0 | 6.03e-01 | 92.4% | 98.3% |
| 4215822 | 1.1.8.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel | 0.67 | 50.0 | 4.91e-01 | 93.9% | 74.3% |
| 3602933 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.67 | 56.0 | 5.72e-01 | 93.9% | 96.9% |
| 2526359 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.66 | 53.0 | 5.54e-01 | 93.9% | 98.3% |
| 4660105 | 3468.1.1.1 ↗ | a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN | 0.65 | 57.0 | 4.50e-01 | 98.5% | 83.3% |
| 4514735 | 1049.2.1.4 ↗ | alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › Baseplate_J | 0.64 | 47.0 | 3.38e-01 | 95.5% | 27.4% |
| 4437930 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.56 | 44.0 | 3.02e-01 | 93.9% | 23.9% |
| 3515518 | 1.1.8.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C | 0.56 | 48.0 | 3.94e-01 | 97.0% | 51.2% |
| 3332789 | 1.1.8.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C | 0.56 | 46.0 | 3.84e-01 | 93.9% | 50.8% |
| 1823202 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.54 | 42.0 | 3.67e-01 | 92.4% | 54.7% |
| 4770106 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.54 | 45.0 | 3.98e-01 | 95.5% | 67.3% |
| 3387889 | 4.1.1.451 ↗ | beta barrels › SH3 › SH3 › SH3 › N_NLPC_P60, SH3_6, SH3_7 | 0.53 | 32.0 | 2.21e-01 | 95.5% | 16.2% |
| 4989772 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 36.0 | 3.43e-01 | 92.4% | 61.2% |